1. Allaire JJ, Horner J, Marti V, Porte N (2014) Markdown: markdown rendering for R. R package version 0.6,4. http://CRAN.R-project.org/package=markdown. Accessed 7 Aug 2019
2. Aronesty E (2011) ea-utils: command-line tools for processing biological sequencing data. https://github.com/ExpressionAnalysis/ea-utils. Accessed 25 Aug 2014
3. Bakshi A, Moin M, Madhav MS (2020) Metagenomics in agriculture. In: Chopra R, Chopra C, Sharma NR (eds) State-of-the-Art. Metagenomics: Techniques, Applications, Challenges and Opportunities, 1st edn. Springer, Singapore, pp 167–187
4. Boettiger C (2014) Knit citations: citations for knitr markdown files. R package version 1.0.5. 2014. http://CRAN.R-project.org/package=knitcitations. Accessed 15 Sep 2019
5. Buchholz F, Antonielli L, Kostić T, Sessitsch A, Mitter B (2019) The bacterial community in potato is recruited from soil and partly inherited across generations. PLoS ONE 14:e0223691. https://doi.org/10.1371/journal.pone.0223691