An Efficient Branch-and-bound Algorithm for Finding a Maximum Clique with Computational Experiments

Author:

Tomita Etsuji,Kameda Toshikatsu

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Management Science and Operations Research,Control and Optimization,Computer Science Applications

Reference29 articles.

1. Akutsu, T., Hayashida, M., Bahadur, D.K.C., Tomita, E., Suzuki, J., Horimoto, K. Dynamic programming and clique based approaches for protein threading with profiles and constraints, IEICE Trans. on Fundamentals of Electronics, Communications and Computer Sciences E89-A 1215–1222 (2006): The preliminary version was presented in: Akutsu, T., Hayashida, M., Tomita, E., Suzuki, J., Horimoto, K.: Protein threading with profiles and constraints, Proc. IEEE Symposium on Bioinformatics and Bioengineering (BIBE 2004). pp. 537–544 (2004)

2. Bahadur D.K.C., Akutsu T., Tomita E., Seki T., Fujiyama A. (2002) Point matching under non-uniform distortions and protein side chain packing based on efficient maximum clique algorithms. Genome Inform. 13, 143–152

3. Bahadur D.K.C., Tomita E., Suzuki J., Horimoto K., Akutsu T. (2005) Protein side-chain packing problem: a maximum edge-weight clique algorithmic approach. J. Bioinform Comput. Biol. 3, 103–126

4. Bahadur D.K.C., Tomita E., Suzuki J., Horimoto K., Akutsu T. (2006) Protein threading with profiles and distance constraints using clique based algorithms. J. Bioinform. Comput. Biol. 4, 19–42

5. Balas E., Yu C.S. (1986) Finding a maximum clique in an arbitrary graph. SIAM J. Comput. 15, 1054–1068

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