Draft genome sequence of the keylime (Citrus × aurantiifolia) pathogen Colletotrichum limetticola

Author:

Menicucci Andrea,Tikami Isis,Benocci Tiziano,Zapparata Antonio,Massola Júnior Nelson Sidnei,Peres Natalia Aparecida,Timmer Lavern Wayne,Prodi Antonio,Baroncelli RiccardoORCID

Funder

CAPES, Brazil

European Union Next-GenerationEU

Alma Mater Studiorum - Università di Bologna

Publisher

Springer Science and Business Media LLC

Subject

Plant Science

Reference24 articles.

1. Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, Von Heijne G, Nielsen H (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks. Nat Biotechnol 37:420–423. https://doi.org/10.1038/s41587-019-0036-z

2. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J Comput Biol 19:455–477. https://doi.org/10.1089/cmb.2012.0021

3. Baroncelli R, Amby DB, Zapparata A, Sarrocco S, Vannacci G, Le Floch G, Harrison RJ, Holub E, Sukno SA, Sreenivasaprasad S, Thon MR (2016) Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics 17:555. https://doi.org/10.1186/s12864-016-2917-6

4. Baroncelli R, Cobo-Díaz JF, Benocci T, Peng M, Battaglia E, Haridas S, Andreopoulos W, LaButti K, Pangilinan J, Lipzen A, Koriabine M, Bauer D, Floch GL, Mäkelä MR, Drula E, Henrissat B, Grigoriev IV, Crouch JA, De Vries RP, Sukno SA, Thon MR (2022) Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi (preprint). Microbiology. https://doi.org/10.1101/2022.09.22.508453

5. Baroncelli R, Pensec F, Da Lio D, Boufleur T, Vicente I, Sarrocco S, Picot A, Baraldi E, Sukno S, Thon M, Le Floch G (2021) Complete Genome Sequence of the Plant-Pathogenic Fungus Colletotrichum lupini. MPMI 34:1461–1464. https://doi.org/10.1094/MPMI-07-21-0173-A

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