RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup
Author:
Publisher
Springer Science and Business Media LLC
Subject
Applied Mathematics,Agricultural and Biological Sciences (miscellaneous),Modelling and Simulation
Link
http://link.springer.com/content/pdf/10.1007/s00285-015-0894-z.pdf
Reference21 articles.
1. Amman F, Bernhart SH, Doose G, Hofacker I, Qin J, Stadler PF, Will S (2013) The trouble with long-range base pairs in RNA folding. Adv Bioinf Comput Biol LNCS 8213:1–11
2. Backofen R, Tsur D, Zakov S, Ziv-Ukelson M (2011) Sparse RNA folding: time and space efficient algorithms. J Discret Algorithm 9(1):12–31
3. Clote P, Kranakis E, Krizanc D (2013) Asymptotic structural properties of quasi-random saturated structures of RNA. Algorithms Mol Biol 8:24
4. Dimitrieva S, Bucher P (2012) Practicality and time complexity of a sparsified RNA folding algorithm. J Bioinfo Comput Bio 10:1241007
5. Flajolet P, Sedgewick R (2010) Analytic combinatorics, Cambridge University Press, Cambridge. ISBN-13:9780521898065
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