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Sparse RNA folding: Time and space efficient algorithms

  • Published:2011-03 Issue:1 Volume:9 Page:12-31
  • ISSN:1570-8667
  • Container-title:Journal of Discrete Algorithms
  • language:en
  • Short-container-title:Journal of Discrete Algorithms

Author:

Backofen Rolf,Tsur Dekel,Zakov Shay,Ziv-Ukelson Michal

Funder

Frankel Center for Computer Science at Ben Gurion University of the Negev

German Research Foundation

German Federal Ministry of Education and Research

Publisher

Elsevier BV

Subject

Computational Theory and Mathematics,Discrete Mathematics and Combinatorics,Theoretical Computer Science

Reference41 articles.

1. Approximation and exact algorithms for RNA secondary structure prediction and recognition of stochastic context-free languages;Akutsu;Journal of Combinatorial Optimization,1999

2. RNA–RNA interaction prediction and antisense RNA target search;Alkan;Journal of Computational Biology,2006

3. Efficient parameter estimation for RNA secondary structure prediction;Andronescu;Bioinformatics,2007

4. New clique and independent set algorithms for circle graphs;Apostolico;Discrete Applied Mathematics,1992

5. Sparse RNA folding: Time and space efficient algorithms;Backofen,2009

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