De novo assembly of a Chinese soybean genome-Reference-Cited by-同舟云学术

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De novo assembly of a Chinese soybean genome

Published:2018-07-27 Issue:8 Volume:61 Page:871-884
ISSN:1674-7305
Container-title:Science China Life Sciences
language:en
Short-container-title:Sci. China Life Sci.

Author:

Shen Yanting,Liu Jing,Geng Haiying,Zhang Jixiang,Liu Yucheng,Zhang Haikuan,Xing Shilai,Du Jianchang,Ma Shisong,Tian Zhixi

Publisher

Springer Science and Business Media LLC

Subject

General Agricultural and Biological Sciences,General Environmental Science,General Biochemistry, Genetics and Molecular Biology

Link

http://link.springer.com/article/10.1007/s11427-018-9360-0/fulltext.html

Reference111 articles.

1. Akdemir, K.C., and Chin, L. (2015). HiCPlotter integrates genomic data with interaction matrices. Genome Biol 16, 198.

2. Badouin, H., Gouzy, J., Grassa, C.J., Murat, F., Staton, S.E., Cottret, L., Lelandais–Brière, C., Owens, G.L., Carrère, S., Mayjonade, B., et al. (2017). The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature 546, 148–152.

3. Besemer, J., and Borodovsky, M. (2005). GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33, W451–W454.

4. Bickhart, D.M., Rosen, B.D., Koren, S., Sayre, B.L., Hastie, A.R., Chan, S., Lee, J., Lam, E.T., Liachko, I., Sullivan, S.T., et al. (2017). Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nat Genet 49, 643–650.

5. Bolger, A.M., Lohse, M., and Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114–2120.

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