An Approach to Analyze Longitudinal Zero-Inflated Microbiome Count Data Using Two-Stage Mixed Effects Models-Reference-Cited by-同舟云学术

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An Approach to Analyze Longitudinal Zero-Inflated Microbiome Count Data Using Two-Stage Mixed Effects Models

Published:2020-10-01 Issue:2 Volume:13 Page:267-290
ISSN:1867-1764
Container-title:Statistics in Biosciences
language:en
Short-container-title:Stat Biosci

Author:

Wang Jian,Reyes-Gibby Cielito C.,Shete Sanjay^ORCID

Funder

National Cancer Institute

NIDCR

CPRIT

The Betty B. Marcus Chair in Cancer Prevention

National Institute of Dental and Craniofacial Research

National Institute of Allergy and Infectious Diseases

Publisher

Springer Science and Business Media LLC

Subject

Biochemistry, Genetics and Molecular Biology (miscellaneous),Statistics and Probability

Link

https://link.springer.com/content/pdf/10.1007/s12561-020-09295-y.pdf

Reference49 articles.

1. Turnbaugh PJ, Hamady M, Yatsunenko T et al (2009) A core gut microbiome in obese and lean twins. Nature 457:480–484

2. Koeth RA, Wang ZE, Levison BS et al (2013) Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis. Nat Med 19:576–585

3. Qin J, Li Y, Cai Z et al (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490:55–60

4. Karlsson FH, Tremaroli V, Nookaew I et al (2013) Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature 498:99–103

5. Qin N, Yang F, Li A et al (2014) Alterations of the human gut microbiome in liver cirrhosis. Nature 513:59–64

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1. Estimation and selection for spatial zero‐inflated count models;Environmetrics;2024-04-05

2. A zero-inflated model for spatiotemporal count data with extra zeros: application to 1950–2015 tornado data in Kansas;Environmental and Ecological Statistics;2023-12-23

3. A flexible quasi‐likelihood model for microbiome abundance count data;Statistics in Medicine;2023-08-22

4. Randomized quantile residuals for diagnosing zero-inflated generalized linear mixed models with applications to microbiome count data;BMC Bioinformatics;2021-11-25

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