Methods for Bioinformatic Prediction of Genuine sRNAs from Outer Membrane Vesicles
Author:
Ali Ali,Salem Mohamed
Reference29 articles.
1. Hoekstra D, van der Laan JW, de Leij L, Witholt B (1976) Release of outer membrane fragments from normally growing Escherichia coli. Biochim Biophys Acta 455(3):889–899. https://doi.org/10.1016/0005-2736(76)90058-4 2. Turnbull L, Toyofuku M, Hynen AL, Kurosawa M, Pessi G, Petty NK, Osvath SR, Carcamo-Oyarce G, Gloag ES, Shimoni R, Omasits U, Ito S, Yap X, Monahan LG, Cavaliere R, Ahrens CH, Charles IG, Nomura N, Eberl L, Whitchurch CB (2016) Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms. Nat Commun 7:11220. https://doi.org/10.1038/ncomms11220 3. Renelli M, Matias V, Lo RY, Beveridge TJ (2004) DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential. Microbiology 150(Pt 7):2161–2169. https://doi.org/10.1099/mic.0.26841-0 4. Chapagain P, Ali A, Kidane DT, Farone M, Salem M (2021) sRNAs enriched in outer membrane vesicles of pathogenic Flavobacterium psychrophilum interact with immune genes of rainbow trout. bioRxiv:2021.2012.2022.473952. doi:https://doi.org/10.1101/2021.12.22.473952 5. Yaron S, Kolling GL, Simon L, Matthews KR (2000) Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. Appl Environ Microbiol 66(10):4414–4420. https://doi.org/10.1128/AEM.66.10.4414-4420.2000
|
|