A Review of Approaches for Optimizing Phylogenetic Likelihood Calculations-Reference-Cited by-同舟云学术

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A Review of Approaches for Optimizing Phylogenetic Likelihood Calculations

Published:2019 Issue: Volume: Page:1-19
ISSN:1568-2684
Container-title:Bioinformatics and Phylogenetics
language:
Short-container-title:

Author:

Stamatakis Alexandros

Publisher

Springer International Publishing

Link

http://link.springer.com/content/pdf/10.1007/978-3-030-10837-3_1

Reference41 articles.

1. Aberer, A.J., Kobert, K., Stamatakis, A.: ExaBayes: massively parallel Bayesian tree inference for the whole-genome era. Mol. Biol. Evol. 31(10), 2553–2556 (2014)

2. Ayres, D.L., Darling, A., Zwickl, D.J., Beerli, P., Holder, M.T., Lewis, P.O., Huelsenbeck, J.P., Ronquist, F., Swofford, D.L., Cummings, M.P., et al.: BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Syst. Biol. 61(1), 170–173 (2011)

3. Biczok, R., Bozsoky, P., Eisenmann, P., Ernst, J., Ribizel, T., Scholz, F., Trefzer, A., Weber, F., Hamann, M., Stamatakis, A.: Two C++ libraries for counting trees on a phylogenetic terrace. bioRxiv, p. 211276 (2017)

4. Boussau, B., Szöllősi, G.J., Duret, L., Gouy, M., Tannier, E., Daubin, V.: Genome-scale coestimation of species and gene trees. Genome Res. 23(2), 323–330 (2013)

5. Brent, R.P.: An algorithm with guaranteed convergence for finding a zero of a function. Comput. J. 14(4), 422–425 (1971)

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Recent progress on methods for estimating and updating large phylogenies;Philosophical Transactions of the Royal Society B: Biological Sciences;2022-08-22

2. High-Performance Phylogenetic Inference;Bioinformatics and Phylogenetics;2019

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