High-Performance Phylogenetic Inference-Reference-Cited by-同舟云学术

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High-Performance Phylogenetic Inference

Published:2019 Issue: Volume: Page:39-45
ISSN:1568-2684
Container-title:Bioinformatics and Phylogenetics
language:
Short-container-title:

Author:

Bader David A.,Madduri Kamesh

Publisher

Springer International Publishing

Link

http://link.springer.com/content/pdf/10.1007/978-3-030-10837-3_3

Reference54 articles.

1. Aberer, A.J., Kobert, K., Stamatakis, A.: ExaBayes: massively parallel Bayesian tree inference for the whole-genome era. Mol. Biol. Evol. 31(10), 2553–2556 (2014). https://doi.org/10.1093/molbev/msu236

2. Altekar, G., Dwarkadas, S., Huelsenbeck, J.P., Ronquist, F.: Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20(3), 407–415 (2004). https://doi.org/10.1093/bioinformatics/btg427

3. Ayres, D.L., Cummings, M.P.: Rerooting trees increases opportunities for concurrent computation and results in markedly improved performance for phylogenetic inference. In: Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 247–256 (2018). https://doi.org/10.1109/IPDPSW.2018.00049

4. Ayres, D.L., Darling, A., Zwickl, D.J., Beerli, P., Holder, M.T., Lewis, P.O., Huelsenbeck, J.P., Ronquist, F., Swofford, D.L., Cummings, M.P., Rambaut, A., Suchard, M.A.: BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Syst. Biol. 61(1), 170–173 (2012). https://doi.org/10.1093/sysbio/syr100

5. Bader, D.A., Moret, B.M.E.: GRAPPA runs in record time. HPC Wire 9, 47 (2000)

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1. Recent progress on methods for estimating and updating large phylogenies;Philosophical Transactions of the Royal Society B: Biological Sciences;2022-08-22

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