Evolutionary Rate Change and the Transformation from Additive to Ultrametric: Modal Similarity of Orthologs in Fish and Flower Phylogenomics
Author:
Santos Muñoz Daniella,Lam Eric,Sankoff David
Publisher
Springer International Publishing
Reference37 articles.
1. Amemiya, C.T., Alföldi, J., Lee, A.P., Fan, S., Philippe, H., MacCallum, I., Braasch, I., Manousaki, T., Schneider, I., Rohner, N., Organ, C., Chalopin, D., Smith, J.J., Robinson, M., Dorrington, R.A., Gerdol, M., Aken, B., Biscotti, M.A., Barucca, M., Baurain, D., Berlin, A.M., Blatch, G.L., Buonocore, F., Burmester, T., Campbell, M.S., Canapa, A., Cannon, J.P., Christoffels, A., De Moro, G., Edkins, A.L., Fan, L., Fausto, A.M., Feiner, N., Forconi, M., Gamieldien, J., Gnerre, S., Gnirke, A., Goldstone, J.V., Haerty, W., Hahn, M.E., Hesse, U., Hoffmann, S., Johnson, J., Karchner, S.I., Kuraku, S., Lara, M., Levin, J.Z., Litman, G.W., Mauceli, E., Miyake, T., Mueller, M.G., Nelson, D.R., Nitsche, A., Olmo, E., Ota, T., Pallavicini, A., Panji, S., Picone, B., Ponting, C.P., Prohaska, S.J., Przybylski, D., Saha, N.R., Ravi, V., Ribeiro, F.J., Sauka-Spengler, T., Scapigliati, G., Searle, S.M.J., Sharpe, T., Simakov, O., Stadler, P.F., Stegeman, J.J., Sumiyama, K., Tabbaa, D., Tafer, H., Turner-Maier, J., van Heusden, P., White, S., Williams, L., Yandell, M., Brinkmann, H., Volff, J.N., Tabin, C.J., Shubin, N., Schartl, M., Jaffe, D.B., Postlethwait, J.H., Venkatesh, B., Di Palma, F., Lander, E.S., Meyer, A., Lindblad-Toh, K.: The African coelacanth genome provides insights into tetrapod evolution. Nature 496, 311 (2013) 2. Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.m., Dehal, P., Christoffels, A., Rash, S., Hoon, S., Smit, A., Gelpke, M.D.S., Roach, J., Oh, T., Ho, I.Y., Wong, M., Detter, C., Verhoef, F., Predki, P., Tay, A., Lucas, S., Richardson, P., Smith, S.F., Clark, M.S., Edwards, Y.J.K., Doggett, N., Zharkikh, A., Tavtigian, S.V., Pruss, D., Barnstead, M., Evans, C., Baden, H., Powell, J., Glusman, G., Rowen, L., Hood, L., Tan, Y.H., Elgar, G., Hawkins, T., Venkatesh, B., Rokhsar, D., Brenner, S.: Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297(5585), 1301–1310 (2002). https://doi.org/10.1126/science.1072104 3. Bandelt, H.J.: Recognition of tree metrics. SIAM J. Discrete Math. 3(1), 1–6 (1990) 4. Betancur-Rodriguez, R., Ortí, G., Pyron, R.A., Morlon, H.: Fossil-based comparative analyses reveal ancient marine ancestry erased by extinction in ray-finned fishes. Ecol. Lett. 18(5), 441–450 (2015). https://doi.org/10.1111/ele.12423 5. Betancur-Rodriguez, R., Wiley, E.O., Arratia, G., Acero, A., Bailly, N., Miya, M., Lecointre, G., Ortí, G.: Phylogenetic classification of bony fishes. BMC Evol. Biol. 17(1), 162 (2017). https://doi.org/10.1186/s12862-017-0958-3
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