Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses-Reference-Cited by-同舟云学术

Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses

Published:2005-07-01 Issue:3 Volume:138 Page:1195-1204
ISSN:1532-2548
Container-title:Plant Physiology
language:en
Short-container-title:

Author:

Usadel Björn¹,Nagel Axel¹,Thimm Oliver¹,Redestig Henning¹,Blaesing Oliver E.¹,Palacios-Rojas Natalia¹,Selbig Joachim¹,Hannemann Jan¹,Piques Maria Conceição¹,Steinhauser Dirk¹,Scheible Wolf-Rüdiger¹,Gibon Yves¹,Morcuende Rosa¹,Weicht Daniel¹,Meyer Svenja¹,Stitt Mark¹

Affiliation:

1. Max Planck Institute of Molecular Plant Physiology, 14476 Golm, Germany (B.U., O.T., H.R., O.E.B., N.P.-R., J.S., J.H., M.C.P., D.S., W.-R.S., Y.G., R.M., D.W., M.S.); and RZPD German Resource Centre for Genome Research, D–14059 Berlin, Germany (A.N., S.M.)

Abstract

Abstract MapMan is a user-driven tool that displays large genomics datasets onto diagrams of metabolic pathways or other processes. Here, we present new developments, including improvements of the gene assignments and the user interface, a strategy to visualize multilayered datasets, the incorporation of statistics packages, and extensions of the software to incorporate more biological information including visualization of coresponding genes and horizontal searches for similar global responses across large numbers of arrays.

Publisher

Oxford University Press (OUP)

Subject

Plant Science,Genetics,Physiology

Link

http://academic.oup.com/plphys/article-pdf/138/3/1195/37829310/plphys_v138_3_1195.pdf

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