Mitogenomic features of three species of Entomobryoidea (Collembola) from China

Author:

GODEIRO NERIVANIA NUNESORCID,XU CONG,ZHANG GUOQIANG,ZHANG FENGORCID

Abstract

Three novel mitogenomes of Entomobryoidea were assembled and annotated. Sequences final lengths were 14,683 bp for Alloscopus bannaensis, 14,884 bp for Sinhomidia bicolor, and 14,794 bp for Coecobrya sp., including 13 PCGs, 22 tRNA, and 2 rRNA genes. To confirm the morphological identifications, maximum likelihood and Bayesian analyses were performed and the species were placed in the correct phylogenetic position, except A. bannaensis which support value was low to confirm its placement. All three mitogenomes are the first ones published for these genera, the genetic data generated here will be useful for further phylogenetic analyses of the group Collembola.  

Publisher

Magnolia Press

Subject

Animal Science and Zoology,Ecology, Evolution, Behavior and Systematics

Reference1 articles.

1.

Bellini, B.C., Cipola, N.G. & Godeiro, N.N. (2015) New species of Lepidocyrtus Bourlet and Entomobrya Rondani (Collembola: Entomobryoidea: Entomobryidae) from Brazil. Zootaxa 4027, 227–242. https://doi.org/10.11646/zootaxa.4027.2.3
Bellini, B.C., Santos, N.M.C., Souza, P.G.C. & Weiner, W.M. (2018) Two new species of Brazilian springtails (Hexapoda: Collembola) with comments on Neotropical Brachystomella Ågren and Seira (Lepidocyrtinus) Börner. Insect Systematics and Evolution 1–30. https://doi.org/10.1163/1876312X-00002192
Bellinger, P.F., Christiansen, K.A. & Janssens, F. (1996–2021) Checklist of the Collembola of the World. Available from: http:// www.collembola.org (accessed 10 January 2022)
Börner, C. (1906) Das System der Collembolen nebst Beschreibung neuer Collembolen des Hamburger Naturhistorischen Museums. Mitteilungen aus den Naturhistorischen Museum in Hamburg 23, 147–188.
Brook, G. (1882) On a new genus of Collembola (Sinella) allied to Degeeria Nicolet. Journal of the Linnean Society of London (Zoology) 16, 541–545. https://doi.org/10.1111/j.1096-3642.1882.tb02398.x
Carapelli, A., Convey, P., Nardi, F. & Frati, F. (2014) The mitochondrial genome of the antarctic springtail Folsomotoma octooculata (Hexapoda: Collembola), and an update on the phylogeny of the collembolan lineages based on mitogenomic data. Entomologia 2, 46–55. https://doi.org/10.4081/entomologia.2014.190
Cucini, C., Fanciulli, P.P., Frati, F., Convey, P., Nardi, F. & Carapelli, A. (2020) Re-Evaluating the internal phylogenetic relationships of Collembola by means of mitogenome data. Genes 12. https://doi.org/10.3390/genes12010044
Denis, J.R. (1929) Sur deux Collemboles de Madagascar. Bulletin du Muséum 1, 104–106.
Dierckxsens, N., Mardulyn, P. & Smits, G. (2020) Unraveling heteroplasmy patterns with NOVOPlasty. NAR Genomics and Bioinformatics 2. https://doi.org/10.1093/nargab/lqz011
Godeiro, N.N., Pacheco, G., Liu, S., Cipola, N.G., Berbel-filho, W.M., Zhang, F., Gilbert, M.T.P. & Bellini, B.C. (2020) Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes. Zoologica Scripta 49, 329–339. https://doi.org/10.1111/zsc.12408
Godeiro, N.N., Bellini, B.C., Ding, N., Xu, C., Ding, Y. & Zhang, F. (2021) A mitogenomic phylogeny of the Entomobryoidea (Collembola): A comparative perspective. Zoologica scripta 50, 658–666. https://doi.org/10.1111/zsc.12487
Handschin, E. (1925) Beiträge zur Collembolenfauna der Sundainseln. Treubia 6, 225–270. https://doi.org/10.1002/mmnd.48019250305
Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular biology and evolution 35, 518–522. https://doi.org/10.1093/molbev/msx281
Lartillot, N., Rodrigues, N., Stubbs, D. & Richer, J. (2013) PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Systematic biology 62, 611–615. https://doi.org/10.1093/sysbio/syt022
Linnaeus, C. (1767) Systema naturae, per regna tria naturae, secundum classes, ordines, genera, species, cum caracteribus, differentiis, synonymis, locis. Tom. I. Pars II. Editio Duodecima Reformata. Stockholm, Sweden: Laurenti Salvii, 533‒1327. https://doi.org/10.5962/bhl.title.156772
MacGillivray, A. (1896) The american species of Isotoma. The Canadian Entomologist 28(2), 47–58. https://doi.org/10.4039/Ent2847-2
Meng, G., Li, Y., Yang, C. & Liu, S. (2019) MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic acids research, 1–7. https://doi.org/10.1093/nar/gkz173
Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., von Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Molecular biology and evolution 37, 1530–1534. https://doi.org/10.1093/molbev/msaa015
Nunes, R.C., Godeiro, N.N., Pacheco, G., Liu, S., Gilbert, M.T.P., Valin, F.A., Zhang, F. & Bellini, B.C. (2019) The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position. Zoologica Scripta 48, 783–800. https://doi.org/10.1111/zsc.12377
Reumont von, B.M., Jenner, R.A., Wills, M.A., Dell’Ampio, E., Pass, G., Ebersberger, I., Meyer, B., Koenemann, S., Iliffe, T.M., Stamatakis, A., Niehuis, O., Meusemann, K. & Misof, B. (2012) Pancrustacean phylogeny in the light of new phylogenomic data: Support for remipedia as the possible sister group of hexapoda. Molecular Biology and Evolution 29, 1031–1045. https://doi.org/10.1093/molbev/msr270
Sun, X., Yu, D., Xie, Z., Dong, J., Ding, Y., Yao, H. & Greenslade, P. (2020) Phylomitogenomic analyses on collembolan higher taxa with enhanced taxon sampling and discussion on method selection. PlosOne 15, 1–21. https://doi.org/10.1371/journal.pone.0230827
Wang, F., Chen, J. & Christiansen, K. (2002) A new species of the subgenus Coecobrya (Collembola: Entomobryidae) from China. Journal of Entomological Science 37, 213–218. https://doi.org/10.18474/0749-8004-37.3.213
Wray, D. L. (1953) Some new species of springtail insects (Collembola). Nature Notes, Occasional Papers 1, 1–7.
Yosii, R. (1956) Hohlencollembolen Japans II. Japanese Journal of Zoology 11, 609–627.
Yosii, R. (1965) On some Collembola of Japan and adjacent countries. Contributions from the Biological Laboratory Kyoto University 19, 1–71.
Zhang, F., Deharveng, L., Greenslade, P. & Chen, J. (2009) Revision of Acanthocyrtus (Collembola: Entomobryidae), with description of a new genus from eastern Asia. Zoological Journal of the Linnean Society 157, 495–514. https://doi.org/10.1111/j.1096-3642.2008.00521.x
Zhang, F., Ma, Y. & Greenslade, P. (2017) New Australian Paronellidae (Collembola) reveal anomalies in existing tribal diagnoses. Invertebrate Systematics 31, 375–393. https://doi.org/10.1071/IS16073
Zhang, F., Bellini, B.C. & Soto-Adames, F.N. (2019) New insights into the systematics of Entomobryoidea (Collembola: Entomobryomorpha): first instar chaetotaxy, homology and classification. Zoological Systematics 44, 249–278. https://doi.org/10.11865/zs.201926
Zhang, F., Cipola, N.G., Pan, Z. & Ding, Y. (2020) New insight into the systematics of Heteromurini (Collembola: Entomobryidae: Heteromurinae) with special reference to Alloscopus and Sinodicranocentrus gen. n. Arthropod Systematics and Phylogeny 78, 1–16.
https://doi.org/10.26049/ASP78-1-2020-01

Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3