HEATSTER: A Database and Web Server for Identification and Classification of Heat Stress Transcription Factors in Plants-Reference-Cited by-同舟云学术

HEATSTER: A Database and Web Server for Identification and Classification of Heat Stress Transcription Factors in Plants

Published:2019-01 Issue: Volume:13 Page:117793221882136
ISSN:1177-9322
Container-title:Bioinformatics and Biology Insights
language:en
Short-container-title:Bioinform Biol Insights

Author:

Berz Jannik¹,Simm Stefan¹²,Schuster Sebastian³,Scharf Klaus-Dieter¹,Schleiff Enrico¹²,Ebersberger Ingo⁴⁵⁶

Affiliation:

1. Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, Frankfurt am Main, Germany

2. Frankfurt Institute of Advanced Studies, Department of Life Sciences, Frankfurt, Germany

3. Center for Integrative Bioinformatics Vienna (CIBIV), Max F. Perutz Laboratories, Vienna, Austria

4. Department of Biosciences, Inst. of Cell Biology and Neuroscience, Applied Bioinformatics Group, Goethe University, Frankfurt am Main, Germany

5. Senckenberg Biodiversity and Climate Research Centre (BiK-F), Frankfurt am Main, Germany

6. LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt am Main, Germany

Abstract

Heat stress transcription factors (HSFs) regulate transcriptional response to a large number of environmental influences, such as temperature fluctuations and chemical compound applications. Plant HSFs represent a large and diverse gene family. The HSF members vary substantially both in gene expression patterns and molecular functions. HEATSTER is a web resource for mining, annotating, and analyzing members of the different classes of HSFs in plants. A web-interface allows the identification and class assignment of HSFs, intuitive searches in the database and visualization of conserved motifs, and domains to classify novel HSFs.

Publisher

SAGE Publications

Subject

Applied Mathematics,Computational Mathematics,Computer Science Applications,Molecular Biology,Biochemistry

Link

http://journals.sagepub.com/doi/pdf/10.1177/1177932218821365

Reference14 articles.

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2. Chaperone network composition inSolanum lycopersicumexplored by transcriptome profiling and microarray meta-analysis

3. Genome-wide analysis identifies chickpea (Cicer arietinum) heat stress transcription factors (Hsfs) responsive to heat stress at the pod development stage

4. Genome-Wide Investigation of Hsf Genes in Sesame Reveals Their Segmental Duplication Expansion and Their Active Role in Drought Stress Response

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