Online data analysis and reduction: An important Co-design motif for extreme-scale computers

Author:

Foster Ian12ORCID,Ainsworth Mark3,Bessac Julie1,Cappello Franck1,Choi Jong4,Di Sheng1,Di Zichao1,Gok Ali M1,Guo Hanqi1,Huck Kevin A5,Kelly Christopher6,Klasky Scott4,Kleese van Dam Kerstin6,Liang Xin4,Mehta Kshitij4,Parashar Manish7,Peterka Tom1,Pouchard Line6,Shu Tong18,Tugluk Ozan3,van Dam Hubertus6,Wan Lipeng4,Wolf Matthew4,Wozniak Justin M1,Xu Wei6,Yakushin Igor1,Yoo Shinjae6,Munson Todd1

Affiliation:

1. Argonne National Laboratory, Lemont, IL, USA

2. University of Chicago, Chicago, IL, USA

3. Brown University, Providence, RI, USA

4. Oak Ridge National Laboratory, Oak Ridge, TN, USA

5. University of Oregon, Eugene, OR, USA

6. Brookhaven National Laboratory, Upton, NY, USA

7. Rutgers University, New Brunswick, NJ, USA

8. Southern Illinois University, Carbondale, IL, USA

Abstract

A growing disparity between supercomputer computation speeds and I/O rates means that it is rapidly becoming infeasible to analyze supercomputer application output only after that output has been written to a file system. Instead, data-generating applications must run concurrently with data reduction and/or analysis operations, with which they exchange information via high-speed methods such as interprocess communications. The resulting parallel computing motif, online data analysis and reduction (ODAR), has important implications for both application and HPC systems design. Here we introduce the ODAR motif and its co-design concerns, describe a co-design process for identifying and addressing those concerns, present tools that assist in the co-design process, and present case studies to illustrate the use of the process and tools in practical settings.

Funder

US Department of Energy

Publisher

SAGE Publications

Subject

Hardware and Architecture,Theoretical Computer Science,Software

Cited by 9 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

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2. Enhancing dynamic mode decomposition workflow with in situ visualization and data compression;Engineering with Computers;2023-03-14

3. An Algorithmic and Software Pipeline for Very Large Scale Scientific Data Compression with Error Guarantees;2022 IEEE 29th International Conference on High Performance Computing, Data, and Analytics (HiPC);2022-12

4. Running Ensemble Workflows at Extreme Scale: Lessons Learned and Path Forward;2022 IEEE 18th International Conference on e-Science (e-Science);2022-10

5. Bootstrapping in-situ workflow auto-tuning via combining performance models of component applications;Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis;2021-11-13

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