Parthenon—a performance portable block-structured adaptive mesh refinement framework

Author:

Grete Philipp12ORCID,Dolence Joshua C34ORCID,Miller Jonah M34ORCID,Brown Joshua56,Ryan Ben34ORCID,Gaspar Andrew5,Glines Forrest2ORCID,Swaminarayan Sriram5,Lippuner Jonas34,Solomon Clell J7,Shipman Galen5ORCID,Junghans Christoph5ORCID,Holladay Daniel5ORCID,Stone James M8,Roberts Luke F3

Affiliation:

1. University of Hamburg, Hamburger Sternwarte, Germany

2. Department of Physics and Astronomy, Michigan State University, East Lansing, MI, USA

3. Computational Physics and Methods, Los Alamos National Laboratory, Los Alamos, NM, USA

4. Center for Theoretical Astrophysics, Los Alamos National Laboratory, Los Alamos, NM, USA

5. Applied Computer Science, Los Alamos National Laboratory, Los Alamos, NM, USA

6. National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, TN, USA

7. Eulerian Codes, Los Alamos National Laboratory, Los Alamos, NM, USA

8. School of Natural Sciences, Institute for Advanced Study, Princeton, NJ, USA

Abstract

On the path to exascale the landscape of computer device architectures and corresponding programming models has become much more diverse. While various low-level performance portable programming models are available, support at the application level lacks behind. To address this issue, we present the performance portable block-structured adaptive mesh refinement (AMR) framework Parthenon, derived from the well-tested and widely used Athena++ astrophysical magnetohydrodynamics code, but generalized to serve as the foundation for a variety of downstream multi-physics codes. Parthenon adopts the Kokkos programming model, and provides various levels of abstractions from multidimensional variables, to packages defining and separating components, to launching of parallel compute kernels. Parthenon allocates all data in device memory to reduce data movement, supports the logical packing of variables and mesh blocks to reduce kernel launch overhead, and employs one-sided, asynchronous MPI calls to reduce communication overhead in multi-node simulations. Using a hydrodynamics miniapp, we demonstrate weak and strong scaling on various architectures including AMD and NVIDIA GPUs, Intel and AMD x86 CPUs, IBM Power9 CPUs, as well as Fujitsu A64FX CPUs. At the largest scale on Frontier (the first TOP500 exascale machine), the miniapp reaches a total of 1.7 × 1013 zone-cycles/s on 9216 nodes (73,728 logical GPUs) at [Formula: see text] weak scaling parallel efficiency (starting from a single node). In combination with being an open, collaborative project, this makes Parthenon an ideal framework to target exascale simulations in which the downstream developers can focus on their specific application rather than on the complexity of handling massively-parallel, device-accelerated AMR.

Funder

Los Alamos National Laboratory

H2020 Marie Skłodowska-Curie Actions

Oak Ridge National Laboratory

Publisher

SAGE Publications

Subject

Hardware and Architecture,Theoretical Computer Science,Software

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1. Adapting arepo-rt for exascale computing: GPU acceleration and efficient communication;Monthly Notices of the Royal Astronomical Society;2024-07-29

2. Benchmarking with Supernovae: A Performance Study of the FLASH Code;Practice and Experience in Advanced Research Computing 2024: Human Powered Computing;2024-07-17

3. Cholla-MHD: An Exascale-capable Magnetohydrodynamic Extension to the Cholla Astrophysical Simulation Code;The Astrophysical Journal;2024-07-01

4. Early experiences on the OLCF Frontier system with AthenaPK and Parthenon‐Hydro;Concurrency and Computation: Practice and Experience;2024-03-05

5. Making Uintah Performance Portable for Department of Energy Exascale Testbeds;Lecture Notes in Computer Science;2024

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