Cell-Based Screening and Validation of Human Novel Genes Associated with Cell Viability

Author:

Wang Lan1,Gao Xia2,Gao Peng2,Deng Weiwei2,Yu Peng3,Ma Jinjing2,Guo Jinhai2,Wang Xinyu2,Cheng Hualing2,Zhang Chenying2,Yu Chuanfei3,Ma Xi3,Lv Bingfeng3,Lu Yang2,Shi Taiping2,Ma Dalong1

Affiliation:

1. Chinese National Human Genome Center, Beijing, China, Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

2. Chinese National Human Genome Center, Beijing, China

3. Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

Abstract

In the present study, a cell-based high-throughput assay is established to identify novel human genes associated with cell viability. The assay relies on the down-regulation of Renilla luciferase (pRL) activity in a 96-well format. In addition, 2-color fluorescence probes were used to distinguish living and dead cells. As the positive control, the authors used the expression vectors encoding Bax, TNFRSF1A, and TAJ, which were widely known to effectively induce programmed cell death. They screened 409 novel genes (including alternative mRNA splicing forms) cloned in their laboratory and found that 39 genes could significantly down-regulate pRL activity. A subsequent fluorescence-based assay revealed that 4 of the 39 genes (PIP5KL1, OLFM1, RNF122, FAM26B) were associated with cell viability. Further function assays validated that the 4 genes were able to induce both necrosis and apoptosis. These results therefore indicate that a rapid and effective screening system has been developed, which should shed light on some functions of novel genes.

Publisher

Elsevier BV

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