Natural language processing in narrative breast radiology reporting in University Malaya Medical Centre

Author:

Tan Wee Ming1,Ng Wei Lin2,Ganggayah Mogana Darshini1,Hoe Victor Chee Wai3,Rahmat Kartini2,Zaini Hana Salwani4,Mohd Taib Nur Aishah5,Dhillon Sarinder Kaur1ORCID

Affiliation:

1. Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur, Malaysia

2. Department of Biomedical Imaging, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia

3. Department of Social and Preventive Medicine, Universiti Malaya, Kuala Lumpur, Malaysia

4. Department of Information Technology, University of Malaya Medical Centre, Kuala Lumpur, Malaysia

5. Department of Surgery, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia

Abstract

Radiology reporting is narrative, and its content depends on the clinician’s ability to interpret the images accurately. A tertiary hospital, such as anonymous institute, focuses on writing reports narratively as part of training for medical personnel. Nevertheless, free-text reports make it inconvenient to extract information for clinical audits and data mining. Therefore, we aim to convert unstructured breast radiology reports into structured formats using natural language processing (NLP) algorithm. This study used 327 de-identified breast radiology reports from the anonymous institute. The radiologist identified the significant data elements to be extracted. Our NLP algorithm achieved 97% and 94.9% accuracy in training and testing data, respectively. Henceforth, the structured information was used to build the predictive model for predicting the value of the BIRADS category. The model based on random forest generated the highest accuracy of 92%. Our study not only fulfilled the demands of clinicians by enhancing communication between medical personnel, but it also demonstrated the usefulness of mineable structured data in yielding significant insights.

Publisher

SAGE Publications

Subject

Health Informatics

Reference46 articles.

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