Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond-Reference-Cited by-同舟云学术

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Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond

Published:2016 Issue:3 Volume:31 Page:204-212
ISSN:1342-6311
Container-title:Microbes and Environments
language:en
Short-container-title:Microb. Environ.

Author:

Hiraoka Satoshi¹,Yang Ching-chia²,Iwasaki Wataru¹²³

Affiliation:

1. Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, the University of Tokyo

2. Department of Biological Sciences, Graduate School of Science, the University of Tokyo

3. Atmosphere and Ocean Research Institute, the University of Tokyo

Publisher

Japanese Society of Microbial Ecology

Subject

Plant Science,Soil Science,General Medicine,Ecology, Evolution, Behavior and Systematics

Link

https://www.jstage.jst.go.jp/article/jsme2/31/3/31_ME16024/_pdf

Reference185 articles.

1. 1. Abubucker, S., N. Segata, J. Goll, et al. 2012. Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput Biol. 8:e1002358.

2. 2. Afiahayati, , K. Sato, and Y. Sakakibara. 2015. MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning. DNA Res. 22:69-77.

3. 3. Akkermans, A.D.L., M.S. Mirza, H.J.M. Harmsen, H.J. Blok, P.R. Herron, A. Sessitsch, and W.M. Akkermans. 1994. Molecular ecology of microbes: a review of promises, pitfalls, and true progress. FEMS Microbiol Rev. 15:185-194.

4. 4. Albertsen, M., P. Hugenholtz, A. Skarshewski, K.L. Nielsen, G.W. Tyson, and P.H. Nielsen. 2013. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol. 31:533-538.

5. 5. Alneberg, J., B.S. Bjarnason, I. de Bruijn, et al. 2014. Binning metagenomic contigs by coverage and composition. Nat Methods. 11:1144-1146.

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