Mg2+-dependent conformational equilibria in CorA and an integrated view on transport regulation

Author:

Johansen Nicolai Tidemand1ORCID,Bonaccorsi Marta2ORCID,Bengtsen Tone34ORCID,Larsen Andreas Haahr14ORCID,Tidemand Frederik Grønbæk1ORCID,Pedersen Martin Cramer1ORCID,Huda Pie5ORCID,Berndtsson Jens6ORCID,Darwish Tamim7ORCID,Yepuri Nageshewar Rao7ORCID,Martel Anne8,Pomorski Thomas Günther910ORCID,Bertarello Andrea2ORCID,Sansom Mark4ORCID,Rapp Mikaela6ORCID,Crehuet Ramon311ORCID,Schubeis Tobias2ORCID,Lindorff-Larsen Kresten3ORCID,Pintacuda Guido2ORCID,Arleth Lise1ORCID

Affiliation:

1. Condensed Matter Physics, Niels Bohr Institute, University of Copenhagen

2. Centre de RMN à Très hauts Champs de Lyon (UMR 5280, CNRS / Ecole Normale Supérieure de Lyon / Université Claude Bernard Lyon 1), University of Lyon

3. Structural Biology and NMR Laboratory and Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen

4. Department of Biochemistry, University of Oxford

5. Australian Institute for Bioengineering and Nanotechnology, The University of Queensland

6. Department of Biochemistry and Biophysics, Center for Biomembrane Research, Stockholm University

7. National Deuteration Facility, Australian Nuclear Science and Technology Organization

8. Institut Laue–Langevin

9. Section for Transport Biology, Department of Plant and Environmental Sciences, University of Copenhagen

10. Department of Molecular Biochemistry, Faculty of Chemistry and Biochemistry, Ruhr University

11. CSIC-Institute for Advanced Chemistry of Catalonia (IQAC)

Abstract

The CorA family of proteins regulates the homeostasis of divalent metal ions in many bacteria, archaea, and eukaryotic mitochondria, making it an important target in the investigation of the mechanisms of transport and its functional regulation. Although numerous structures of open and closed channels are now available for the CorA family, the mechanism of the transport regulation remains elusive. Here, we investigated the conformational distribution and associated dynamic behaviour of the pentameric Mg2+ channel CorA at room temperature using small-angle neutron scattering (SANS) in combination with molecular dynamics (MD) simulations and solid-state nuclear magnetic resonance spectroscopy (NMR). We find that neither the Mg2+-bound closed structure nor the Mg2+-free open forms are sufficient to explain the average conformation of CorA. Our data support the presence of conformational equilibria between multiple states, and we further find a variation in the behaviour of the backbone dynamics with and without Mg2+. We propose that CorA must be in a dynamic equilibrium between different non-conducting states, both symmetric and asymmetric, regardless of bound Mg2+ but that conducting states become more populated in Mg2+-free conditions. These properties are regulated by backbone dynamics and are key to understanding the functional regulation of CorA.

Funder

Lundbeckfonden

Novo Nordisk Fonden

Biotechnology and Biological Sciences Research Council

Engineering and Physical Sciences Research Council

Wellcome Trust

National Collaborative Research Infrastructure Strategy

European Commission

Villum Fonden

Horizon 2020 - Research and Innovation Framework Programme

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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