Kinase-dead ATM protein is highly oncogenic and can be preferentially targeted by Topo-isomerase I inhibitors

Author:

Yamamoto Kenta1234,Wang Jiguang567,Sprinzen Lisa1234,Xu Jun8,Haddock Christopher J9,Li Chen123,Lee Brian J123,Loredan Denis G123,Jiang Wenxia123,Vindigni Alessandro9,Wang Dong8,Rabadan Raul567,Zha Shan1231011ORCID

Affiliation:

1. Institute for Cancer Genetics, Columbia Unviersity, New York, United States

2. Department of Pathology and Cell Biology, Columbia University, New York, United States

3. College of Physicians and Surgeons, Columbia University, New York, United States

4. Pathobiology and Molecular Medicine Graduate Program, Columbia University, New York, United States

5. Department of Biomedical Informatics, Columbia University, New York, United States

6. Department of Systems Biology, Columbia University, New York, United States

7. College of Physicians & Surgeons, Columbia University, New York, United States

8. Skaggs School of Pharmacy & Pharmaceutical Sciences, University of California San Diego, La Jolla, United States

9. Edward A Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, United States

10. Division of Pediatric Oncology, Hematology and Stem Cell Transplantation, Columbia University, New York, United States

11. Department of Pediatrics, Columbia University, New York, United States

Abstract

Missense mutations in ATM kinase, a master regulator of DNA damage responses, are found in many cancers, but their impact on ATM function and implications for cancer therapy are largely unknown. Here we report that 72% of cancer-associated ATM mutations are missense mutations that are enriched around the kinase domain. Expression of kinase-dead ATM (AtmKD/-) is more oncogenic than loss of ATM (Atm-/-) in mouse models, leading to earlier and more frequent lymphomas with Pten deletions. Kinase-dead ATM protein (Atm-KD), but not loss of ATM (Atm-null), prevents replication-dependent removal of Topo-isomerase I-DNA adducts at the step of strand cleavage, leading to severe genomic instability and hypersensitivity to Topo-isomerase I inhibitors. Correspondingly, Topo-isomerase I inhibitors effectively and preferentially eliminate AtmKD/-, but not Atm-proficientor Atm-/- leukemia in animal models. These findings identify ATM kinase-domain missense mutations as a potent oncogenic event and a biomarker for Topo-isomerase I inhibitor based therapy.

Funder

National Cancer Institute

National Institute of General Medical Sciences

American Cancer Society

Leukemia and Lymphoma Society

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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