Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

Author:

Luzzatto-Knaan Tal1ORCID,Garg Neha1,Wang Mingxun2,Glukhov Evgenia3,Peng Yao4,Ackermann Gail5,Amir Amnon5,Duggan Brendan M1,Ryazanov Sergey6,Gerwick Lena3,Knight Rob5,Alexandrov Theodore16,Bandeira Nuno12,Gerwick William H13,Dorrestein Pieter C123

Affiliation:

1. Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, United States

2. Center for Computational Mass Spectrometry and Department of Computer Science and Engineering, University of California San Diego, San Diego, United States

3. Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, San Diego, United States

4. Department of Chemistry and Biochemistry, University of California San Diego, San Diego, United States

5. Departments of Pediatrics and Computer Science and Engineering, University of California San Diego, San Diego, United States

6. European Molecular Biology Laboratory, Heidelberg, Germany

Abstract

Natural product screening programs have uncovered molecules from diverse natural sources with various biological activities and unique structures. However, much is yet underexplored and additional information is hidden in these exceptional collections. We applied untargeted mass spectrometry approaches to capture the chemical space and dispersal patterns of metabolites from an in-house library of marine cyanobacterial and algal collections. Remarkably, 86% of the metabolomics signals detected were not found in other available datasets of similar nature, supporting the hypothesis that marine cyanobacteria and algae possess distinctive metabolomes. The data were plotted onto a world map representing eight major sampling sites, and revealed potential geographic locations with high chemical diversity. We demonstrate the use of these inventories as a tool to explore the diversity and distribution of natural products. Finally, we utilized this tool to guide the isolation of a new cyclic lipopeptide, yuvalamide A, from a marine cyanobacterium.

Funder

National Institutes of Health

European Commission

H2020

Vaadia-BARD Fellowship

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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