A modular approach to integrating multiple data sources into real-time clinical prediction for pediatric diarrhea

Author:

Brintz Ben J12ORCID,Haaland Benjamin3,Howard Joel4,Chao Dennis L5,Proctor Joshua L5,Khan Ashraful I6,Ahmed Sharia M2,Keegan Lindsay T1,Greene Tom1,Keita Adama Mamby7,Kotloff Karen L8,Platts-Mills James A9,Nelson Eric J1011,Levine Adam C12,Pavia Andrew T4,Leung Daniel T213ORCID

Affiliation:

1. Division of Epidemiology, Department of Internal Medicine, University of Utah, Salt Lake City, United States

2. Division of Infectious Diseases, Department of Internal Medicine, University of Utah, Salt Lake City, United States

3. Population Health Sciences, University of Utah, Salt Lake City, United States

4. Division of Pediatric Infectious Diseases, University of Utah, Salt Lake City, United States

5. Institute of Disease Modeling, Bill and Melinda Gates Foundation, Seattle, United States

6. International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh

7. Centre Pour le Développement des Vaccins-Mali, Bamako, Mali

8. Division of Infectious Disease and Tropical Pediatrics, University of Maryland, Baltimore, United States

9. Division of Infectious Diseases and International Health, University of Virginia, Charlottesville, United States

10. Departments of Pediatrics, University of Florida, Gainesville, United States

11. Departments of Environmental and Global Health, University of Florida, Gainesville, United States

12. Department of Emergency Medicine, Brown University, Providence, United States

13. Division of Microbiology and Immunology, Department of Internal Medicine, University of Utah, Salt Lake City, United States

Abstract

Traditional clinical prediction models focus on parameters of the individual patient. For infectious diseases, sources external to the patient, including characteristics of prior patients and seasonal factors, may improve predictive performance. We describe the development of a predictive model that integrates multiple sources of data in a principled statistical framework using a post-test odds formulation. Our method enables electronic real-time updating and flexibility, such that components can be included or excluded according to data availability. We apply this method to the prediction of etiology of pediatric diarrhea, where 'pre-test’ epidemiologic data may be highly informative. Diarrhea has a high burden in low-resource settings, and antibiotics are often over-prescribed. We demonstrate that our integrative method outperforms traditional prediction in accurately identifying cases with a viral etiology, and show that its clinical application, especially when used with an additional diagnostic test, could result in a 61% reduction in inappropriately prescribed antibiotics.

Funder

National Center for Advancing Translational Sciences

National Institute of Allergy and Infectious Diseases

Bill and Melinda Gates Foundation

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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