Metabolite profiling of human renal cell carcinoma reveals tissue-origin dominance in nutrient availability

Author:

Abbott Keene L123ORCID,Ali Ahmed23,Reinfeld Bradley I456,Deik Amy3ORCID,Subudhi Sonu7ORCID,Landis Madelyn D5,Hongo Rachel A5,Young Kirsten L5,Kunchok Tenzin8,Nabel Christopher S2910,Crowder Kayla D8ORCID,Kent Johnathan R11,Madariaga Maria Lucia L11,Jain Rakesh K7,Beckermann Kathryn E5,Lewis Caroline A8,Clish Clary B3,Muir Alexander12ORCID,Rathmell W Kimryn513,Rathmell Jeffrey1314ORCID,Vander Heiden Matthew G12315ORCID

Affiliation:

1. Department of Biology, Massachusetts Institute of Technology

2. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

3. Broad Institute of MIT and Harvard

4. Medical Scientist Training Program, Vanderbilt University

5. Department of Medicine, Vanderbilt University Medical Center (VUMC)

6. Graduate Program in Cancer Biology, Vanderbilt University

7. Steele Laboratories of Tumor Biology, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School

8. Whitehead Institute for Biomedical Research

9. Department of Medicine, Massachusetts General Hospital

10. Harvard Medical School

11. Department of Surgery, University of Chicago Medicine

12. Ben May Department of Cancer Research, University of Chicago

13. Vanderbilt Center for Immunobiology and Vanderbilt-Ingram Cancer Center, VUMC

14. Department of Pathology, Microbiology and Immunology, VUMC

15. Dana-Farber Cancer Institute

Abstract

The tumor microenvironment is a determinant of cancer progression and therapeutic efficacy, with nutrient availability playing an important role. Although it is established that the local abundance of specific nutrients defines the metabolic parameters for tumor growth, the factors guiding nutrient availability in tumor compared to normal tissue and blood remain poorly understood. To define these factors in renal cell carcinoma (RCC), we performed quantitative metabolomic and comprehensive lipidomic analyses of tumor interstitial fluid (TIF), adjacent normal kidney interstitial fluid (KIF), and plasma samples collected from patients. TIF nutrient composition closely resembles KIF, suggesting that tissue-specific factors unrelated to the presence of cancer exert a stronger influence on nutrient levels than tumor-driven alterations. Notably, select metabolite changes consistent with known features of RCC metabolism are found in RCC TIF, while glucose levels in TIF are not depleted to levels that are lower than those found in KIF. These findings inform tissue nutrient dynamics in RCC, highlighting a dominant role of non-cancer-driven tissue factors in shaping nutrient availability in these tumors.

Funder

National Science Foundation

National Cancer Institute

National Institutes of Health

Howard Hughes Medical Institute

American Association for Cancer Research

Ludwig Cancer Center at Harvard

Nile Albright Research Foundation

National Foundation for Cancer Research

Jane’s Trust Foundation

Department of Defense

MIT Center for Precision Cancer Medicine

Ludwig Center at MIT

Publisher

eLife Sciences Publications, Ltd

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