Inference of nonlinear receptive field subunits with spike-triggered clustering

Author:

Shah Nishal P1ORCID,Brackbill Nora2ORCID,Rhoades Colleen3,Kling Alexandra456,Goetz Georges456,Litke Alan M7ORCID,Sher Alexander8,Simoncelli Eero P910ORCID,Chichilnisky EJ456ORCID

Affiliation:

1. Department of Electrical Engineering, Stanford University, Stanford, United States

2. Department of Physics, Stanford University, Stanford, United States

3. Department of Bioengineering, Stanford University, Stanford, United States

4. Department of Neurosurgery, Stanford School of Medicine, Stanford, United States

5. Department of Ophthalmology, Stanford University, Stanford, United States

6. Hansen Experimental Physics Laboratory, Stanford University, Stanford, United States

7. Institute for Particle Physics, University of California, Santa Cruz, Santa Cruz, United States

8. Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, Santa Cruz, United States

9. Center for Neural Science, New York University, New York, United States

10. Howard Hughes Medical Institute, Chevy Chase, United States

Abstract

Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood estimation of subunits by soft-clustering spike-triggered stimuli, and demonstrate its effectiveness in visual neurons. For parasol retinal ganglion cells in macaque retina, estimated subunits partitioned the receptive field into compact regions, likely representing aggregated bipolar cell inputs. Joint clustering revealed shared subunits between neighboring cells, producing a parsimonious population model. Closed-loop validation, using stimuli lying in the null space of the linear receptive field, revealed stronger nonlinearities in OFF cells than ON cells. Responses to natural images, jittered to emulate fixational eye movements, were accurately predicted by the subunit model. Finally, the generality of the approach was demonstrated in macaque V1 neurons.

Funder

National Science Foundation

National Eye Institute

Howard Hughes Medical Institute

Pew Charitable Trusts

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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