Inducible and reversible inhibition of miRNA-mediated gene repression in vivo

Author:

La Rocca Gaspare1ORCID,King Bryan1,Shui Bing2ORCID,Li Xiaoyi13,Zhang Minsi1,Akat Kemal M4ORCID,Ogrodowski Paul1,Mastroleo Chiara1,Chen Kevin1ORCID,Cavalieri Vincenzo5,Ma Yilun6,Anelli Viviana7,Betel Doron8,Vidigal Joana9,Tuschl Thomas4,Meister Gunter10ORCID,Thompson Craig B1ORCID,Lindsten Tullia11,Haigis Kevin2,Ventura Andrea1ORCID

Affiliation:

1. Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, United States

2. Department of Cancer Biology, Dana Farber Cancer Institute, Boston, United States

3. Louis V. Gerstner Jr. Graduate School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, New York, United States

4. Laboratory of RNA Molecular Biology, The Rockefeller University, New York, United States

5. Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Palermo, Italy

6. Weill Cornell/Rockefeller/Sloan-Kettering Tri-Institutional MD-PhD Program, New York, United States

7. Center of Integrative Biology, University of Trento, Trento, Italy

8. Hem/Oncology, Medicine and Institution for Computational Biomedicine, Weill Cornell Medical College, New York, United States

9. Laboratory of Biochemistry and Molecular Biology, National Cancer Institute, Bethesda, United States

10. Regensburg Center for Biochemistry, University of Regensburg, Regensburg, Germany

11. Immunology Program, Memorial Sloan Kettering Cancer Center, New York, United States

Abstract

Although virtually all gene networks are predicted to be controlled by miRNAs, the contribution of this important layer of gene regulation to tissue homeostasis in adult animals remains unclear. Gain and loss-of-function experiments have provided key insights into the specific function of individual miRNAs, but effective genetic tools to study the functional consequences of global inhibition of miRNA activity in vivo are lacking. Here we report the generation and characterization of a genetically engineered mouse strain in which miRNA-mediated gene repression can be reversibly inhibited without affecting miRNA biogenesis or abundance. We demonstrate the usefulness of this strategy by investigating the consequences of acute inhibition of miRNA function in adult animals. We find that different tissues and organs respond differently to global loss of miRNA function. While miRNA-mediated gene repression is essential for the homeostasis of the heart and the skeletal muscle, it is largely dispensable in the majority of other organs. Even in tissues where it is not required for homeostasis, such as the intestine and hematopoietic system, miRNA activity can become essential during regeneration following acute injury. These data support a model where many metazoan tissues primarily rely on miRNA function to respond to potentially pathogenic events.

Funder

National Cancer Institute

Starr Foundation

National Institute of General Medical Sciences

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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