A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates

Author:

Fowler Philip W1ORCID,Wright Carla1,Spiers Helen23,Zhu Tingting4,Baeten Elisabeth ML5,Hoosdally Sarah W1,Gibertoni Cruz Ana L1ORCID,Roohi Aysha1,Kouchaki Samaneh4,Walker Timothy M1ORCID,Peto Timothy EA1,Miller Grant2,Lintott Chris2,Clifton David4,Crook Derrick W1ORCID,Walker A Sarah1ORCID, ,

Affiliation:

1. Nuffield Department of Medicine, University of Oxford

2. Zooniverse, Department of Physics, University of Oxford

3. Electron Microscopy Science Technology Platform, The Francis Crick Institute

4. Institute of Biomedical Engineering, University of Oxford

5. Citizen Scientist, c/o Zooniverse, Department of Physics, University of Oxford

Abstract

Tuberculosis is a respiratory disease that is treatable with antibiotics. An increasing prevalence of resistance means that to ensure a good treatment outcome it is desirable to test the susceptibility of each infection to different antibiotics. Conventionally, this is done by culturing a clinical sample and then exposing aliquots to a panel of antibiotics, each being present at a pre-determined concentration, thereby determining if the sample isresistant or susceptible to each sample. The minimum inhibitory concentration (MIC) of a drug is the lowestconcentration that inhibits growth and is a more useful quantity but requires each sample to be tested at a range ofconcentrations for each drug. Using 96-well broth micro dilution plates with each well containing a lyophilised pre-determined amount of an antibiotic is a convenient and cost-effective way to measure the MICs of several drugs at once for a clinical sample. Although accurate, this is still an expensive and slow process that requires highly-skilled and experienced laboratory scientists. Here we show that, through the BashTheBug project hosted on the Zooniverse citizen science platform, a crowd of volunteers can reproducibly and accurately determine the MICs for 13 drugs and that simply taking the median or mode of 11–17 independent classifications is sufficient. There is therefore a potential role for crowds to support (but not supplant) the role of experts in antibiotic susceptibility testing.

Funder

Wellcome Trust

Bill and Melinda Gates Foundation

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

Reference28 articles.

1. Defining and Measuring Success in Online Citizen Science: A Case Study of Zooniverse Projects;Cox;Computing in Science & Engineering,2015

2. Epidemiological cutoff values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis;CRyPTIC Consortium;The European Respiratory Journal,2022

3. Help us fight antibiotic resistance;Fowler,2017

4. pyniverse: a Python package to analyse classifications made by volunteers in a generic Zooniverse citizen science project;Fowler,2018

5. bashthebug: a Python package to analyse the results of the Zooniverse volunteers for the BashTheBug citizen science project;Fowler,2018

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