Topological network analysis of patient similarity for precision management of acute blood pressure in spinal cord injury

Author:

Torres-Espín Abel1ORCID,Haefeli Jenny1,Ehsanian Reza2,Torres Dolores1,Almeida Carlos A1,Huie J Russell13,Chou Austin1,Morozov Dmitriy4,Sanderson Nicole5,Dirlikov Benjamin6,Suen Catherine G1,Nielson Jessica L78,Kyritsis Nikos1ORCID,Hemmerle Debra D1ORCID,Talbott Jason F9,Manley Geoffrey T1,Dhall Sanjay S1,Whetstone William D10,Bresnahan Jacqueline C13,Beattie Michael S13,McKenna Stephen L1112,Pan Jonathan Z13ORCID,Ferguson Adam R13ORCID,

Affiliation:

1. Weill Institute for Neurosciences; Brain and Spinal Injury Center (BASIC), Department of Neurological Surgery, University of California, San Francisco; Zuckerberg San Francisco General Hospital and Trauma Center

2. Division of Physical Medicine and Rehabilitation, Department of Orthopaedics and Rehabilitation, University of New Mexico School of Medicine

3. San Francisco Veterans Affairs Healthcare System

4. Computational Research Division, Lawrence Berkeley National Laboratory

5. Lawrence Berkeley National Laboratory

6. Rehabilitation Research Center, Santa Clara Valley Medical Center

7. Department of Psychiatry and Behavioral Science, and University of Minnesota

8. Institute for Health Informatics, University of Minnesota

9. Department of Radiology and Biomedical Imaging, University of California, San Francisco

10. Department of Emergency Medicine, University of California, San Francisco; Zuckerberg San Francisco General Hospital and Trauma Center

11. Department of Physical Medicine and Rehabilitation, Santa Clara Valley Medical Center

12. Department of Neurosurgery, Stanford University

13. Department of Anesthesia and Perioperative Care, University of California, San Francisco; Zuckerberg San Francisco General Hospital and Trauma Center

Abstract

Background:Predicting neurological recovery after spinal cord injury (SCI) is challenging. Using topological data analysis, we have previously shown that mean arterial pressure (MAP) during SCI surgery predicts long-term functional recovery in rodent models, motivating the present multicenter study in patients.Methods:Intra-operative monitoring records and neurological outcome data were extracted (n = 118 patients). We built a similarity network of patients from a low-dimensional space embedded using a non-linear algorithm, Isomap, and ensured topological extraction using persistent homology metrics. Confirmatory analysis was conducted through regression methods.Results:Network analysis suggested that time outside of an optimum MAP range (hypotension or hypertension) during surgery was associated with lower likelihood of neurological recovery at hospital discharge. Logistic and LASSO (least absolute shrinkage and selection operator) regression confirmed these findings, revealing an optimal MAP range of 76–[104-117] mmHg associated with neurological recovery.Conclusions:We show that deviation from this optimal MAP range during SCI surgery predicts lower probability of neurological recovery and suggest new targets for therapeutic intervention.Funding:NIH/NINDS: R01NS088475 (ARF); R01NS122888 (ARF); UH3NS106899 (ARF); Department of Veterans Affairs: 1I01RX002245 (ARF), I01RX002787 (ARF); Wings for Life Foundation (ATE, ARF); Craig H. Neilsen Foundation (ARF); and DOD: SC150198 (MSB); SC190233 (MSB); DOE: DE-AC02-05CH11231 (DM).

Funder

National Institute of Neurological Disorders and Stroke

U.S. Department of Veterans Affairs

Wings for Life

Craig H. Neilsen Foundation

Department of Defense

Foundation for Anesthesia Education and Research

Department of Energy

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

Reference52 articles.

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4. Finding community structure in very large networks;Clauset;Physical Review E,2004

5. Impact of Mean Arterial Blood Pressure During the First Seven Days Post Spinal Cord Injury;Cohn;Topics in Spinal Cord Injury Rehabilitation,2010

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