Mapping the single-cell landscape of acral melanoma and analysis of the molecular regulatory network of the tumor microenvironments

Author:

He Zan1,Xin Zijuan234,Yang Qiong234,Wang Chen234,Li Meng234,Rao Wei1,Du Zhimin1,Bai Jia1,Guo Zixuan5,Ruan Xiuyan234,Zhang Zhaojun234,Fang Xiangdong234ORCID,Zhao Hua1ORCID

Affiliation:

1. Department of Dermatology, The First Medical General Hospital of People's Liberation Army

2. Beijing Institute of Genomics & China National Center for Bioinformation, Chinese Academy of Sciences

3. University of Chinese Academy of Science

4. Beijing Key Laboratory of Genome and Precision Medicine Technologies

5. Senior Department of Orthopedics, The Fourth Medical Center of General Hospital of People’s Liberation Army

Abstract

Acral melanoma (AM) exhibits a high incidence in Asian patients with melanoma, and it is not well treated with immunotherapy. However, little attention has been paid to the characteristics of the immune microenvironment in AM. Therefore, in this study, we collected clinical samples from Chinese patients with AM and conducted single-cell RNA sequencing to analyze the heterogeneity of its tumor microenvironments (TMEs) and the molecular regulatory network. Our analysis revealed that genes, such as TWIST1, EREG, TNFRSF9, and CTGF could drive the deregulation of various TME components. The molecular interaction relationships between TME cells, such as MIF-CD44 and TNFSF9-TNFRSF9, might be an attractive target for developing novel immunotherapeutic agents.

Funder

National Natural Science Foundation of China

Publisher

eLife Sciences Publications, Ltd

Subject

General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine,General Neuroscience

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