A Hardware Accelerator for Long Sequence Alignment with the Bit-Vector Scoring Scheme and Divide-and-Conquer Traceback
Author:
Affiliation:
1. National Taiwan University,Graduate Institute of Electronics Engineering,Taipei,Taiwan
Funder
Ministry of Science and Technology
Publisher
IEEE
Link
http://xplorestaging.ieee.org/ielx7/9948537/9948538/09948560.pdf?arnumber=9948560
Reference10 articles.
1. A linear space algorithm for computing maximal common subsequences
2. A fast bit-vector algorithm for approximate string matching based on dynamic programming
3. Bit-Vector-Based Hardware Accelerator for DNA Alignment Tools
4. Martin oi and Mile iki. Edlib: a c/c++ library for fast, exact sequence alignment using edit distance;Bioinformatics,2017
5. Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform
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1. GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment;56th Annual IEEE/ACM International Symposium on Microarchitecture;2023-10-28
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