A Computational Workflow for Estimation of Short RNA Polyadenylation using Direct RNA Nanopore Sequencing with Polyuridylation-Reference-Cited by-同舟云学术

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A Computational Workflow for Estimation of Short RNA Polyadenylation using Direct RNA Nanopore Sequencing with Polyuridylation

Published:2022-06-22 Issue: Volume: Page:
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Container-title:2022 19th International Joint Conference on Computer Science and Software Engineering (JCSSE)
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Author:

Karunyakorn Jirachote¹,Pratanwanich Naruemon²,Pongpanich Monnat³,Kaewsapsak Pornchai⁴

Affiliation:

1. Program in Bioinformatics and Computational Biology, Graduate school, Chulalongkorn University,Bangkok,Thailand,10330

2. Center of Excellence in Computational Molecular Biology, Chulalongkorn University,Faculty of Science,Department of Mathematics and Computer Science,Bangkok,Thailand,10330

3. Chulalongkorn University,Faculty of Science,Department of Mathematics and Computer Science,Bangkok,Thailand,10330

4. Chulalongkorn University,Faculty of Medicine, Research Unit of Systems Microbiology,Department of Biochemistry,Bangkok,Thailand,10330

Funder

Chulalongkorn University

Publisher

IEEE

Link

http://xplorestaging.ieee.org/ielx7/9836023/9836237/09836262.pdf?arnumber=9836262

Reference21 articles.

1. Formation of mRNA 3′ Ends in Eukaryotes: Mechanism, Regulation, and Interrelationships with Other Steps in mRNA Synthesis

2. The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

3. Highly parallel direct RNA sequencing on an array of nanopores

4. Genomewide characterization of non-polyadenylated RNAs

5. A complete bacterial genome assembled de novo using only nanopore sequencing data

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