An FM-Index Based High-Throughput Memory-Efficient FPGA Accelerator for Paired-End Short-Read Mapping-Reference-Cited by-同舟云学术

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An FM-Index Based High-Throughput Memory-Efficient FPGA Accelerator for Paired-End Short-Read Mapping

Published:2023-12 Issue:6 Volume:17 Page:1331-1341
ISSN:1932-4545
Container-title:IEEE Transactions on Biomedical Circuits and Systems
language:
Short-container-title:IEEE Trans. Biomed. Circuits Syst.

Author:

Yang Chung-Hsuan¹^ORCID,Wu Yi-Chung¹,Chen Yen-Lung¹,Lee Chao-Hsi²,Hung Jui-Hung³^ORCID,Yang Chia-Hsiang⁴^ORCID

Affiliation:

1. Graduate Institute of Electronics Engineering, National Taiwan University, Taipei, Taiwan

2. GeneASIC Technologies Corporation, Hsinchu, Taiwan

3. Department of Computer Science, National Yang Ming Chiao Tung University, Hsinchu, Taiwan

4. Department of Electrical Engineering and Graduate Institute of Electronics Engineering, National Taiwan University, Taipei, Taiwan

Funder

Ministry of Science and Technology

Publisher

Institute of Electrical and Electronics Engineers (IEEE)

Subject

Electrical and Electronic Engineering,Biomedical Engineering

Link

http://xplorestaging.ieee.org/ielx7/4156126/10387969/10177185.pdf?arnumber=10177185

Reference32 articles.

1. Coming of age: ten years of next-generation sequencing technologies

2. Accelerating next generation sequencing data analysis with system level optimizations

3. Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

4. Whole genome sequencing analysis for cancer genomics and precision medicine

5. Clinical and biological insights from viral genome sequencing

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Optimizing Data Parallelism for FM-Based Short-Read Alignment on the Heterogeneous Non-Uniform Memory Access Architectures;Future Internet;2024-06-19

2. Macro Memory Cell Generator for SKY130 PDK;IEEE Access;2024

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