ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks
Author:
Affiliation:
1. Universidade da Coruña, Centro de investigación CITIC, Facultad de Informática, A Coruña, Spain
2. Department of Computer Science, Helsinki Institute for Information Technology, University of Helsinki, Helsinki, Finland
Funder
EU H2020
Marie Sklodowska-Curie
Centro de Investigación de Galicia
Xunta de Galicia
European Commission
Xunta de Galicia/FEDER-UE
Ministerio de Ciencia e Innovación
Academy of Finland
Publisher
Institute of Electrical and Electronics Engineers (IEEE)
Subject
Applied Mathematics,Genetics,Biotechnology
Link
http://xplorestaging.ieee.org/ielx7/8857/10091711/09833468.pdf?arnumber=9833468
Reference35 articles.
1. Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers
2. FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences
3. Inference of viral quasispecies with a paired de Bruijn graph
4. Fast and accurate long-read alignment with Burrows–Wheeler transform
5. The fragment assembly string graph
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