ASAP: <underline>A</underline>ccelerated <underline>S</underline>hort-Read <underline>A</underline>lignment on <underline>P</underline>rogrammable Hardware-Reference-Cited by-同舟云学术

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ASAP: Accelerated Short-Read Alignment on Programmable Hardware

Published:2019-03-01 Issue:3 Volume:68 Page:331-346
ISSN:0018-9340
Container-title:IEEE Transactions on Computers
language:
Short-container-title:IEEE Trans. Comput.

Author:

Banerjee Subho Sankar^ORCID,El-Hadedy Mohamed,Lim Jong Bin,Kalbarczyk Zbigniew T.,Chen Deming,Lumetta Steven S.,Iyer Ravishankar K.^ORCID

Funder

US National Science Foundation;

US National Science Foundation

state of Illinois

Publisher

Institute of Electrical and Electronics Engineers (IEEE)

Subject

Computational Theory and Mathematics,Hardware and Architecture,Theoretical Computer Science,Software

Link

https://ieeexplore.ieee.org/ielaam/12/8637885/8490591-aam.pdf

Cited by 22 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment;Future Generation Computer Systems;2023-12

2. RAPIDx: High-Performance ReRAM Processing In-Memory Accelerator for Sequence Alignment;IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems;2023-10

3. Genomics-GPU: A Benchmark Suite for GPU-accelerated Genome Analysis;2023 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS);2023-04

4. A framework for high-throughput sequence alignment using real processing-in-memory systems;Bioinformatics;2023-03-27

5. ISMatch: A real-time hardware accelerator for inexact string matching of DNA sequences on FPGA;Microprocessors and Microsystems;2023-03

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