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ASAP: Accelerated Short-Read Alignment on Programmable Hardware

  • Published:2019-03-01 Issue:3 Volume:68 Page:331-346
  • ISSN:0018-9340
  • Container-title:IEEE Transactions on Computers
  • language:
  • Short-container-title:IEEE Trans. Comput.

Author:

Banerjee Subho SankarORCID,El-Hadedy Mohamed,Lim Jong Bin,Kalbarczyk Zbigniew T.,Chen Deming,Lumetta Steven S.,Iyer Ravishankar K.ORCID

Funder

US National Science Foundation;

US National Science Foundation

state of Illinois

Publisher

Institute of Electrical and Electronics Engineers (IEEE)

Subject

Computational Theory and Mathematics,Hardware and Architecture,Theoretical Computer Science,Software

Cited by 26 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Power-Efficient Pipelined Multiprocessor Architecture With Parallel Trace-Back Mechanism for Multiple Pairwise Sequence Alignment;IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems;2024-08

2. Data Motion Acceleration: Chaining Cross-Domain Multi Accelerators;2024 IEEE International Symposium on High-Performance Computer Architecture (HPCA);2024-03-02

3. TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers;2024 IEEE International Symposium on High-Performance Computer Architecture (HPCA);2024-03-02

4. WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment;Future Generation Computer Systems;2023-12

5. GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment;56th Annual IEEE/ACM International Symposium on Microarchitecture;2023-10-28
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