DSIM: Distributed Sequence Matching on Near-DRAM Accelerator for Genome Assembly

Author:

Sinha Aman1ORCID,Yang Huei-Chun1,Liu Pei-Yi1,Kuo Yen-Shi1,Fang Yuhao1,Chang Tien-Shuo1,Li Ke-Han1,Lai Bo-Cheng1ORCID

Affiliation:

1. Institute of Electronics, National Yang Ming Chiao Tung University, Hsinchu, Taiwan

Funder

Ministry of Science and Technology, Taiwan

IEEE Publication Technology Group, Piscataway, NJ, USA

Publisher

Institute of Electrical and Electronics Engineers (IEEE)

Subject

Electrical and Electronic Engineering

Reference44 articles.

1. Sniper: Scalable and accurate parallel multi-core simulation;heirman;Proc 8th Int Summer School Adv Comput Archit Compilation High-Perform Embedded Syst Abstr,2012

2. Challenges and Opportunities

3. Computational RAM to accelerate string matching at scale;chowdhury;arXiv 1812 08918,2018

4. PIM-Align: A Processing-in-Memory Architecture for FM-Index Search Algorithm

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1. PANDA: Processing in Magnetic Random-Access Memory-Accelerated de Bruijn Graph-Based DNA Assembly;Journal of Low Power Electronics and Applications;2024-02-02

2. GRONA : A Framework for Gather-and-Reduce On Near-Memory Accelerators;2023 IEEE 16th International Symposium on Embedded Multicore/Many-core Systems-on-Chip (MCSoC);2023-12-18

3. REGAL: Reprogrammable Engines for Genome Analysis on LPDDR4x-based Stacked DRAM;2023 IEEE International Symposium on Circuits and Systems (ISCAS);2023-05-21

4. MSIM: A Highly Parallel Near-Memory Accelerator for MinHash Sketch;2022 IEEE 35th International System-on-Chip Conference (SOCC);2022-09-05

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