Bio-ESMD: A Data Centric Implementation for Large-Scale Biological System Simulation on Sunway TaihuLight Supercomputer-Reference-Cited by-同舟云学术

Bio-ESMD: A Data Centric Implementation for Large-Scale Biological System Simulation on Sunway TaihuLight Supercomputer

Published:2023-03-01 Issue:3 Volume:34 Page:881-893
ISSN:1045-9219
Container-title:IEEE Transactions on Parallel and Distributed Systems
language:
Short-container-title:IEEE Trans. Parallel Distrib. Syst.

Author:

Duan Xiaohui¹^ORCID,Shao Qi¹,Weng Junben²,Schmidt Bertil³^ORCID,Gan Lin⁴^ORCID,Li Guohui²,Fu Haohuan⁵^ORCID,Xue Wei⁴^ORCID,Liu Weiguo¹^ORCID,Yang Guangwen⁴

Affiliation:

1. School of Software, Shandong University, Jinan, Shandong, China

2. Laboratory of Molecular Modeling and Design, State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning, China

3. Institute for Computer Science, Johannes Gutenberg University, Mainz, Germany

4. Department of Computer Science and Technology, Beijing National Research Center for Information Science and Technology, Tsinghua University, Beijing, China

5. Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China

Funder

National Key R&D Program of China

National Natural Science Foundation of China

Jiangsu Innovation Capacity Building Program

Engineering Research Center of Digital Media Technology

Ministry of Education, China

Publisher

Institute of Electrical and Electronics Engineers (IEEE)

Subject

Computational Theory and Mathematics,Hardware and Architecture,Signal Processing

Link

http://xplorestaging.ieee.org/ielx7/71/10012125/10008088.pdf?arnumber=10008088

Reference28 articles.

1. GPU-accelerated molecular modeling coming of age

2. GPU acceleration of cutoff pair potentials for molecular modeling applications

3. 369 Tflop/s molecular dynamics simulations on the Roadrunner general-purpose heterogeneous supercomputer

4. SW_Qsim

5. Enabling Large-scale Simulation of CAM on the Sunway TaihuLight Supercomputer

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