On Crowd-verification of Biological Networks

Author:

Ansari Sam1,Binder Jean1,Boue Stephanie1,Di Fabio Anselmo2,Hayes William3,Hoeng Julia1,Iskandar Anita1,Kleiman Robin3,Norel Raquel4,O'neel Bruce1,Peitsch Manuel C.1,Poussin Carine1,Pratt Dexter5,Rhrissorrakrai Kahn4,Schlage Walter K.1,Stolovitzky Gustavo4,Talikka Marja1

Affiliation:

1. Phillip Morris Products SA, Research and Development, Neuchâtel, Switzerland.

2. Applied Dynamic Solutions, LLC., NJ, USA.

3. Selventa, Cambridge, MA, USA.

4. IBM Computational Biology Center, Yorktown Heights, NY, USA.

5. University of California San Diego, School of Medicine, Departments of Medicine and Bioengineering, La Jolla, CA, USA.

Abstract

Biological networks with a structured syntax are a powerful way of representing biological information generated from high density data; however, they can become unwieldy to manage as their size and complexity increase. This article presents a crowd-verification approach for the visualization and expansion of biological networks. Web-based graphical interfaces allow visualization of causal and correlative biological relationships represented using Biological Expression Language (BEL). Crowdsourcing principles enable participants to communally annotate these relationships based on literature evidences. Gamification principles are incorporated to further engage domain experts throughout biology to gather robust peer-reviewed information from which relationships can be identified and verified. The resulting network models will represent the current status of biological knowledge within the defined boundaries, here processes related to human lung disease. These models are amenable to computational analysis. For some period following conclusion of the challenge, the published models will remain available for continuous use and expansion by the scientific community.

Publisher

SAGE Publications

Subject

Applied Mathematics,Computational Mathematics,Computer Science Applications,Molecular Biology,Biochemistry

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