NAMD2: Greater Scalability for Parallel Molecular Dynamics-Reference-Cited by-同舟云学术

NAMD2: Greater Scalability for Parallel Molecular Dynamics

Published:1999-05 Issue:1 Volume:151 Page:283-312
ISSN:0021-9991
Container-title:Journal of Computational Physics
language:en
Short-container-title:Journal of Computational Physics

Author:

Kalé Laxmikant,Skeel Robert,Bhandarkar Milind,Brunner Robert,Gursoy Attila,Krawetz Neal,Phillips James,Shinozaki Aritomo,Varadarajan Krishnan,Schulten Klaus

Publisher

Elsevier BV

Subject

Computer Science Applications,Physics and Astronomy (miscellaneous),Applied Mathematics,Computational Mathematics,Modelling and Simulation,Numerical Analysis

Reference51 articles.

1. Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations;Andersen;J. Comput. Phys.,1983

2. A hierarchicalONN;Barnes;Nature,1986

3. Free energy via molecular simulation: Applications to chemical and biological systems;Beveridge;Annu. Rev. Biophys. Biophys. Chem.,1989

4. Difficulties with multiple time stepping and the fast multipole algorithm in molecular dynamics;Bishop;J. Comput. Chem.,1997

5. Parallelization of CHARMM for MIMD machines;Brooks;Chemical Design Automation News,1992

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