SCALING DETECTION IN EXTRACHROMOSOMAL DNA-Reference-Cited by-同舟云学术

SCALING DETECTION IN EXTRACHROMOSOMAL DNA

Published:2022-12 Issue:09 Volume:30 Page:
ISSN:0218-348X
Container-title:Fractals
language:en
Short-container-title:Fractals

Author:

JAROSZEWICZ SEBASTIAN¹,MARIANI MARIA C.²³,TWENEBOAH OSEI K.⁴^ORCID,BECCAR-VARELA MARIA P.²

Affiliation:

1. Gerencia de Investigación y Aplicaciones, Comisión Nacional de Energía Atómica, Avenida General Paz 1499, 1650 San Martin, Buenos Aires, Argentina

2. Department of Mathematical Sciences, University of Texas at El Paso, El Paso, TX 79968, USA

3. Computational Science Program, University of Texas at El Paso, El Paso, TX 79968, USA

4. Department of Data Science, Ramapo College of New Jersey, Mahwah, NJ 07430, USA

Abstract

In this work, we study the statistical correlations in mitochondrial and chloroplastid genomes using the diffusion entropy analysis method and estimate the value of the Hurst exponent using the detrended fluctuation analysis. We compare the scaling exponents of both methods for three sets of genomes: mitochondrial DNA from organisms belonging to the plantae and animalia kingdoms and chloroplast DNA. We find that a wide variety of behaviors depart from the Lévy statistics previously proposed for DNA sequences.

Publisher

World Scientific Pub Co Pte Ltd

Subject

Applied Mathematics,Geometry and Topology,Modeling and Simulation

Link

https://www.worldscientific.com/doi/pdf/10.1142/S0218348X22501948

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