Application of counter propagation artificial neural network for classification and genetic diversity assessment of somePseudomonasspecies

Author:

Izadiyan Mahsa1,Taghavi S. Mohsen1,Izadiyan Parisa2

Affiliation:

1. Department of Plant Protection, College of Agriculture, Shiraz University, Shiraz, Iran

2. Medicinal and Natural Products Chemistry Research Center, Shiraz University of Medical Sciences, Shiraz, Iran

Abstract

Members of the genus Pseudomonas bacterium are of great interest because of their importance in plant disease. In this study, DNA fingerprints of 60 strains of Pseudomonas bacteria including three species of Pseudomonas syringae (Pseudomonas syringae pv. syringae (Pss) and Pseudomonas syringae pv. Lachrymans (Psl)), Pseudomonas savastanoi (Psa) and Pseudomonas tolaasii (Pt) were used for developing a robust predictive classification model. The DNA fingerprints were obtained by repetitive polymerase chain reaction (Rep-PCR) using enterobacterial repetitive intergenic consensus (ERIC), repetitive extragenic palindromes (REP), and BOXAIR primers. The classification results of counter propagation artificial neural network (CP-ANN) modeling indicated that a combination of Rep-PCR fingerprinting and chemometrics analysis can be used as an effective and powerful methodology to differentiate species of Pseudomonas and pathovars of P. syringae strains based on a predictive model.

Publisher

World Scientific Pub Co Pte Lt

Subject

Computational Theory and Mathematics,Physical and Theoretical Chemistry,Computer Science Applications

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3