Linear scaling Coulomb interaction in the multiwavelet basis, a parallel implementation

Author:

Jensen Stig Rune1,Jusélius Jonas2,Durdek Antoine3,Flå Tor3,Wind Peter4,Frediani Luca4

Affiliation:

1. Department of Physics and Technology, Centre for Theoretical and Computational Chemistry, UiT, The Arctic University of Norway, N-9037 Tromsø, Norway

2. High Performance Computing Group, Centre for Theoretical and Computational Chemistry, UiT, The Arctic University of Norway, N-9037 Tromsø, Norway

3. Department of Mathematics and Statistics, Centre for Theoretical and Computational Chemistry, UiT, The Arctic University of Norway, N-9037 Tromsø, Norway

4. Department of Chemistry, Centre for Theoretical and Computational Chemistry, UiT, The Arctic University of Norway, N-9037 Tromsø, Norway

Abstract

We present a parallel and linear scaling implementation of the calculation of the electrostatic potential arising from an arbitrary charge distribution. Our approach is making use of the multi-resolution basis of multiwavelets. The potential is obtained as the direct solution of the Poisson equation in its Green's function integral form. In the multiwavelet basis, the formally non local integral operator decays rapidly to negligible values away from the main diagonal, yielding an effectively banded structure where the bandwidth is only dictated by the requested accuracy. This sparse operator structure has been exploited to achieve linear scaling and parallel algorithms. Parallelization has been achieved both through the shared memory (OpenMP) and the message passing interface (MPI) paradigm. Our implementation has been tested by computing the electrostatic potential of the electronic density of long-chain alkanes and diamond fragments showing (sub)linear scaling with the system size and efficent parallelization.

Publisher

World Scientific Pub Co Pte Lt

Subject

Computer Science Applications,Modelling and Simulation

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