Exploring Key Proteins, Pathways and Oxygen Usage Bias of Proteins and Metabolites in Melanoma

Abstract

Hypoxia plays a critical role in melanoma development, but the characteristics of elemental oxygen in proteins and adaptation to hypoxia microenvironments are still unidentified. This study aims to explore oxygen contents (OCs) and differentially expressed proteins (DEP). Protein expression data were retrieved from Human Protein Atlas. The DEP in melanoma samples were compared with normal skin cells. We identified 1,969 DEP, and none of the genes coding these proteins were present on chromosome Y. The average oxygen content (AOC) was 7.24% higher in highly expressed proteins than lowly expressed proteins in melanoma and normal skin cells. The AOC is 2.36% higher in the up regulated proteins (URPs) in melanoma. The essential amino acids in the proteins in melanoma cells contributed to increased OC. Functional dissections of the high OCs in URP displayed that some of these proteins are associated with cytoskeleton, cyclins and cell cycle proteins. The URP interactions were generated using a STRING database. Majority of these URPs are associated in expression, exhibiting sufficient interactions with each other. This study provides useful information regarding protein expression in melanoma cells and the molecular mechanism of melanoma using stoichiogenomics.