The Impact of Centrality Measures in Protein–Protein Interaction Networks: Tools, Databases, Challenges and Future Directions

Abstract

Analyzing protein–protein interaction (PPI) networks using machine learning and deep learning algorithms, alongside centrality measures, holds paramount importance in understanding complex biological systems. These advanced computational techniques enable the extraction of valuable insights from intricate network structures, shedding light on the functional relationships between proteins. By leveraging AI-driven approaches, researchers can uncover key regulatory mechanisms, identify critical nodes within the network and predict novel protein interactions with high accuracy. Ultimately, this integration of computational methodologies enhances our ability to comprehend the dynamic behavior of biological systems at a molecular level, paving the way for advancements in drug discovery, disease understanding and personalized medicine. This review paper starts by outlining various popular available PPI network databases and network centrality calculation tools. A thorough classification of various centrality measures has been identified. It primarily delves into the centrality-driven discoveries within PPI networks in biological systems and suggests using edge centrality measures and a hybrid version of node and edge centrality measures in machine learning algorithms and deep learning algorithms to predict hidden knowledge much more effectively.