Cecelia: a multifunctional image analysis toolbox for decoding spatial cellular interactions and behaviour

Abstract

AbstractWith the ever-increasing complexity of microscopy modalities, it is imperative to have computational workflows that allow researchers to process and perform in-depth quantitative analysis of the resulting images. However, workflows that enable flexible, interactive and intuitive analysis from raw images to analysed data are lacking. We present Cecelia, a toolbox that integrates various open-source packages into a coherent data management suite to make quantitative image analysis accessible for non-specialists.