The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide-Reference-Cited by-同舟云学术

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

Published:2022-10-30 Issue: Volume: Page:
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,Hawrylycz Michael J^ORCID,Martone Maryann E^ORCID,Hof Patrick R^ORCID,Lein Ed S^ORCID,Regev Aviv^ORCID,Ascoli Giorgio A. A^ORCID,Bjaalie Jan G^ORCID,Dong Hong-Wei^ORCID,Ghosh Satrajit S^ORCID,Gillis Jesse^ORCID,Hertzano Ronna^ORCID,Haynor David R^ORCID,Kim Yongsoo^ORCID,Liu Yufeng^ORCID,Miller Jeremy A^ORCID,Mitra Partha P^ORCID,Mukamel Eran^ORCID,Osumi-Sutherland David^ORCID,Peng Hanchuan^ORCID,Ray Patrick L^ORCID,Sanchez Raymond^ORCID,Ropelewski Alex^ORCID,Scheuermann Richard H^ORCID,Tan Shawn Z K^ORCID,Tickle Timothy^ORCID,Tilgner Hagen^ORCID,Varghese Merina^ORCID,Wester Brock^ORCID,White Owen^ORCID,Aevermann Brian^ORCID,Allemang David^ORCID,Ament Seth^ORCID,Athey Thomas L^ORCID,Baker Pamela M^ORCID,Baker Cody^ORCID,Baker Katherine S^ORCID,Bandrowski Anita^ORCID,Bishwakarma Prajal^ORCID,Carr Ambrose^ORCID,Chen Min^ORCID,Choudhury Roni^ORCID,Cool Jonah^ORCID,Creasy Heather^ORCID,D'Orazi Florence^ORCID,Degatano Kylee^ORCID,Dichter Benjamin^ORCID,Ding Song-Lin^ORCID,Dolbeare Tim^ORCID,Ecker Joseph R^ORCID,Fang Rongxin^ORCID,Fillion-Robin Jean-Christophe^ORCID,Fliss Timothy P^ORCID,Gee James^ORCID,Gillespie Tom^ORCID,Gouwens Nathan^ORCID,Halchenko Yaroslav O^ORCID,Harris Nomi^ORCID,Herb Brian R^ORCID,Hintiryan Houri^ORCID,Hood Gregory^ORCID,Horvath Sam,Jarecka Dorota^ORCID,Jiang Shengdian^ORCID,Khajouei Farzaneh^ORCID,Kiernan Elizabeth A^ORCID,Kir Huseyin^ORCID,Kruse Lauren^ORCID,Lee Changkyu^ORCID,Lelieveldt Boudewijn^ORCID,Li Yang^ORCID,Liu Hanqing^ORCID,Markuhar Anup^ORCID,Mathews James^ORCID,Mathews Kaylee L^ORCID,Miller Michael I^ORCID,Mollenkopf Tyler,Mufti Shoaib^ORCID,Mungall Christopher J^ORCID,Ng Lydia^ORCID,Orvis Joshua^ORCID,Puchades Maja A^ORCID,Qu Lei^ORCID,Receveur Joseph P^ORCID,Ren Bing^ORCID,Sjoquist Nathan^ORCID,Staats Brian^ORCID,Thompson Carol L^ORCID,Tward Daniel^ORCID,van Velthoven Cindy T J^ORCID,Wang Quanxin^ORCID,Xie Fangming^ORCID,Xu Hua^ORCID,Yao Zizhen^ORCID,Yun Zhixi^ORCID,Zeng Hongkui^ORCID,Zhang Guo-Qiang^ORCID,Zhang Yun R^ORCID,Zheng Jim W^ORCID,Zingg Brian^ORCID

Abstract

AbstractCharacterizing cellular diversity at different levels of biological organization across data modalities is a prerequisite to understanding the function of cell types in the brain. Classification of neurons is also required to manipulate cell types in controlled ways, and to understand their variation and vulnerability in brain disorders. TheBRAIN Initiative Cell Census Network (BICCN)is an integrated network of data generating centers, data archives and data standards developers, with the goal of systematic multimodal brain cell type profiling and characterization. Emphasis of the BICCN is on the whole mouse brain and demonstration of prototypes for human and non-human primate (NHP) brains. Here, we provide a guide to the cellular and spatial approaches employed, and to accessing and using the BICCN data and its extensive resources, including theBRAIN Cell Data Center (BCDC)which serves to manage and integrate data across the ecosystem. We illustrate the power of the BICCN data ecosystem through vignettes highlighting several BICCN analysis and visualization tools. Finally, we present emerging standards that have been developed or adopted by the BICCN toward FAIR (Wilkinson et al. 2016a) neuroscience. The combined BICCN ecosystem provides a comprehensive resource for the exploration and analysis of cell types in the brain.

Publisher

Cold Spring Harbor Laboratory

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