GESIAP: A Versatile Genetically Encoded Sensor-based Image Analysis Program

Author:

Zheng W. Sharon,Zhang Yajun,Zhu Roger E.,Zhang Peng,Gupta Smriti,Huang LimengORCID,Sahoo Deepika,Guo Kaiming,Glover Matthew E.,Vadodaria Krishna C.,Li Mengyao,Qian Tongrui,Jing Miao,Feng Jiesi,Wan Jinxia,Borden Philip M.ORCID,Ali Farhan,Kwan Alex C.ORCID,Gan Li,Lin Li,Gage Fred H.,Venton B. Jill,Marvin Jonathan S.,Podgorski KasparORCID,Clinton Sarah M.,Zhang Miaomiao,Looger Loren L.ORCID,Li YulongORCID,Zhu J. JuliusORCID

Abstract

Intercellular communication mediated by a large number of neuromodulators diversifies physiological actions, yet neuromodulation remains poorly understood despite the recent upsurge of genetically encoded transmitter sensors. Here, we report the development of a versatile genetically encoded sensor-based image analysis program (GESIAP) that utilizes MATLAB-based algorithms to achieve high-throughput, high-resolution processing of sensor-based functional imaging data. GESIAP enables delineation of fundamental properties (e.g., transmitter spatial diffusion extent, quantal size, quantal content, release probability, pool size, and refilling rate at single release sites) of transmission mediated by various transmitters (i.e., monoamines, acetylcholine, neuropeptides, and glutamate) at various cell types (i.e., neurons, astrocytes, and other non-neuronal cells) of various animal species (i.e., mouse, rat, and human). Our analysis appraises a dozen of newly developed transmitter sensors, validates a conserved model of restricted non-volume neuromodulatory synaptic transmission, and accentuates a broad spectrum of presynaptic release properties that variegate neuromodulation.

Publisher

Cold Spring Harbor Laboratory

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