Interspecific gene flow and vicariance in Northern African rear-edge white oak populations revealed by joint analysis of microsatellites and flanking sequences

Abstract

AbstractRear-edge populations represent reservoirs of potentially unique genetic diversity but are particularly vulnerable to global changes. While continental-scale phylogeographic studies usually do not cover these populations, more focused local scale study of rear-edge populations should help better understand both past evolutionary history and its consequences for the persistence and conservation of these potentially unique populations. We studied molecular variation at 36 sequenced nuclear microsatellites in 11 rear-edge Quercus faginea and Q. canariensis populations across Algeria to shed light on taxonomic relationship, population past evolutionary history and recent demographic trajectory. We used descriptive approach and simulation-based inference to assess the information content and complementarity of linked microsatellite and flanking sequence variations. Genetic differentiation among populations classified into eight well-defined genetic clusters do not allow to unambiguously delineate two species. Instead, continuous level of genetic differentiation indicates interspecific gene flow or drift in isolation. Whereas the analysis of microsatellite variation allowed inferring recent interspecific gene flow, additional nucleotide variation in flanking sequences, by reducing homoplasy, pointed towards ancient interspecific gene flow followed by drift in isolation. The assessment of the weight of each polymorphism in the inference demonstrates the value of linked variation with contrasted mutational mechanisms and rates to refine historical demographic inference. Past population size decline inferred in some of these oak populations as well as low contemporary effective population size for most populations is a concern for the persistence of these populations of high evolutionary significance and conservation value.