Ensemble Forecasts of Coronavirus Disease 2019 (COVID-19) in the U.S.

Author:

Ray Evan LORCID,Wattanachit Nutcha,Niemi JaradORCID,Kanji Abdul Hannan,House Katie,Cramer Estee YORCID,Bracher JohannesORCID,Zheng Andrew,Yamana Teresa KORCID,Xiong Xinyue,Woody Spencer,Wang Yuanjia,Wang LilyORCID,Walraven Robert L,Tomar Vishal,Sherratt Katharine,Sheldon Daniel,Reiner Robert C,Prakash B. Aditya,Osthus DaveORCID,Li Michael Lingzhi,Lee Elizabeth C,Koyluoglu Ugur,Keskinocak Pinar,Gu Youyang,Gu Quanquan,George Glover E.,España Guido,Corsetti Sabrina,Chhatwal JagpreetORCID,Cavany Sean,Biegel Hannah,Ben-Nun Michal,Walker Jo,Slayton Rachel,Lopez Velma,Biggerstaff Matthew,Johansson Michael AORCID,Reich Nicholas GORCID

Abstract

AbstractBackgroundThe COVID-19 pandemic has driven demand for forecasts to guide policy and planning. Previous research has suggested that combining forecasts from multiple models into a single “ensemble” forecast can increase the robustness of forecasts. Here we evaluate the real-time application of an open, collaborative ensemble to forecast deaths attributable to COVID-19 in the U.S.MethodsBeginning on April 13, 2020, we collected and combined one- to four-week ahead forecasts of cumulative deaths for U.S. jurisdictions in standardized, probabilistic formats to generate real-time, publicly available ensemble forecasts. We evaluated the point prediction accuracy and calibration of these forecasts compared to reported deaths.ResultsAnalysis of 2,512 ensemble forecasts made April 27 to July 20 with outcomes observed in the weeks ending May 23 through July 25, 2020 revealed precise short-term forecasts, with accuracy deteriorating at longer prediction horizons of up to four weeks. At all prediction horizons, the prediction intervals were well calibrated with 92-96% of observations falling within the rounded 95% prediction intervals.ConclusionsThis analysis demonstrates that real-time, publicly available ensemble forecasts issued in April-July 2020 provided robust short-term predictions of reported COVID-19 deaths in the United States. With the ongoing need for forecasts of impacts and resource needs for the COVID-19 response, the results underscore the importance of combining multiple probabilistic models and assessing forecast skill at different prediction horizons. Careful development, assessment, and communication of ensemble forecasts can provide reliable insight to public health decision makers.

Publisher

Cold Spring Harbor Laboratory

Reference22 articles.

1. “Nonmechanistic Forecasts of Seasonal Influenza with Iterative One-Week-Ahead Distributions.”;PLoS Computational Biology,2018

2. Busetti, Fabio. 2014. “Quantile Aggregation of Density Forecasts.” SSRN Electronic Journal. https://doi.org/10.2139/ssrn.2550809.

3. Centers for Disease Control and Prevention. 2020. “Previous Forecasts of Total Deaths.” July 15, 2020. https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-usprevious.html.

4. Dean, Natalie E. , Ana Pastore y Piontti , Zachary J. Madewell , Derek A. T. Cummings , Matthew D. T. Hitchings , Keya Joshi , Rebecca Kahn , Alessandro Vespignani , M. Elizabeth Halloran , and Ira M. Longini . 2020. “Ensemble Forecast Modeling for the Design of COVID-19 Vaccine Efficacy Trials.” https://www.mobs-lab.org/uploads/6/7/8/7/6787877/ensembleforecastvaccines_12jun20.pdf.

5. An interactive web-based dashboard to track COVID-19 in real time

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