Author:
Weber Claire,Hirst Marissa B.,Ernest Ben,Baskir Hannah,Tristan Carlos A.,Chu Pei-Hsuan,Singeç Ilyas
Abstract
AbstractSEQUIN is a new web application (app) that allows fast and intuitive RNA-sequencing data analysis for organisms, tissues, and single cells. Integrated app functions enable uploading datasets, quality control, gene set enrichment, data visualization, and differential gene expression analysis. We also present the iPSC Profiler, a practical tool that helps to measure pluripotency and cell differentiation. Freely available to the public, SEQUIN empowers scientists to investigate transcriptome data firsthand with cutting edge statistical methods.
Publisher
Cold Spring Harbor Laboratory
Reference24 articles.
1. Wang, Y.J. et al. Comparative analysis of commercially available single-cell RNA sequencing platforms for their performance in complex human tissues. bioRxiv, 541433 (2019).
2. The reproducibility crisis in the age of digital medicine
3. Current RNA-seq methodology reporting limits reproducibility;Briefings in Bioinformatics,2021
4. Computational strategies for single-cell multi-omics integration;Computational and Structural Biotechnology Journal,2021
5. Jeng, S.L. , Chi, Y.C. , Ma, M.C. , Chan, S.H. & Sun, H.S. Gene expression analysis of combined RNA-seq experiments using a receiver operating characteristic calibrated procedure.
Cited by
1 articles.
订阅此论文施引文献
订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献