Bayesian Emulation and History Matching of JUNE

Author:

Vernon IanORCID,Owen Jonathan,Aylett-Bullock JosephORCID,Cuesta-Lazaro Carolina,Frawley Jonathan,Quera-Bofarull ArnauORCID,Sedgewick AidanORCID,Shi DifuORCID,Truong Henry,Turner Mark,Walker Joseph,Caulfield Tristan,Fong Kevin,Krauss Frank

Abstract

AbstractWe analyse June : a detailed model of Covid-19 transmission with high spatial and demographic resolution, developed as part of the RAMP initiative. June requires substantial computational resources to evaluate, making model calibration and general uncertainty analysis extremely challenging. We describe and employ the Uncertainty Quantification approaches of Bayes linear emulation and history matching, to mimic the June model and to perform a global parameter search, hence identifying regions of parameter space that produce acceptable matches to observed data.

Publisher

Cold Spring Harbor Laboratory

Reference50 articles.

1. Bayesian History Matching of Complex Infectious Disease Models Using Emulation: A Tutorial and a Case Study on HIV in Uganda;Andrianakis;In: PLoS Comput Biol,2015

2. History matching of a complex epidemiological model of human immunodeficiency virus transmission by using variance emulation

3. JUNE: open-source individual-based epidemiology simulation;In: Royal Society open science,2021

4. Joseph Aylett-Bullock et al. “Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox’s Bazar settlement”. In: PLoS Comput Biol 10.17 (2021). doi: https://doi.org/10.1371/journal.pcbi.1009360.

5. Diagnostics for Gaussian process emulators;In: Technometrics,2008

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